CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0153400-01	Rice	mitochondrion	82.61	84.24
TraesCS2A01G499700.1	Wheat	cytosol, mitochondrion	78.99	82.16
TraesCS2D01G499800.1	Wheat	mitochondrion	80.19	81.98
Zm00001d018813_P001	Maize	mitochondrion	81.16	81.95
GSMUA_Achr6P31190_001	Banana	mitochondrion	70.53	71.05
KRH21075	Soybean	mitochondrion	61.11	62.47
KRH11179	Soybean	mitochondrion, plastid	60.39	61.73
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	58.94	60.7
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	58.7	60.45
CDY26295	Canola	mitochondrion, plastid	56.28	58.54
CDX99882	Canola	mitochondrion, plastid	56.04	58.29
Bra032358.1-P	Field mustard	mitochondrion, plastid	55.8	58.04
AT1G30090.1	Thale cress	mitochondrion, plastid	55.56	57.79
VIT_10s0003g03730.t01	Wine grape	cytosol	31.88	57.39
EER90147	Sorghum	cytosol	33.33	35.11
KXG29748	Sorghum	plastid	30.92	29.43
EER91632	Sorghum	plastid	27.54	26.09
OQU82118	Sorghum	cytosol	20.77	24.71
EES06854	Sorghum	cytosol	22.71	24.54
EER95442	Sorghum	mitochondrion	25.6	24.2
KXG24326	Sorghum	cytosol	26.33	23.29
EES05304	Sorghum	cytosol, peroxisome, plastid	25.36	22.88
OQU81371	Sorghum	mitochondrion	20.29	22.28
EES06149	Sorghum	cytosol	17.87	21.39
KXG27134	Sorghum	cytosol	13.29	20.45
KXG30756	Sorghum	cytosol	18.6	18.12
OQU91835	Sorghum	cytosol, nucleus, plastid	19.32	18.02
KXG40080	Sorghum	cytosol	18.36	17.76
OQU83795	Sorghum	cytosol	18.84	17.49
OQU82347	Sorghum	mitochondrion	18.12	15.89

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:8079943	UniProt:C5X9L1	EnsemblPlants:EER97991
ProteinID:EER97991	ProteinID:EER97991.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24411	PANTHER:PTHR24411:SF27	SMART:SM00256	SMART:SM00612	EnsemblPlantsGene:SORBI_3002G036400
SUPFAM:SSF117281	SUPFAM:SSF81383	unigene:Sbi.3267	UniParc:UPI0001A8414B	RefSeq:XP_002461470.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:3429321..3432184

Molecular Weight (calculated)

45824.1 Da

IEP (calculated)

7.659

GRAVY (calculated)

-0.185

Length

414 amino acids

Sequence
(BLAST)

001: MRRVRVSSQQ APVHKLGDAQ MKLTPRFRLA ATSTSTSDPE HQQQQPPSSW EEEQAPLIPG LPDDAALNCL LRLPVSAHDA CRLVCRRWRV LLADKARFFA
101: QRRQLGLRTP WLFTLAFHRC TGKIQWKVLD LGHLTWHAIP AMPCRDRACP RGFGCVATPG GDGADGALLV CGGLVSDMDC PLHLVLKYDI YKNRWTVMTR
201: MLTARSFFAG GVIDGRVYVA GGYSADQFEL NSAEVLDPEK GVWQPIASMG MNMASSDSAV IGGRLYVTEG CAWPFFSSPR GQVYDPKIDR WEVMPVGMRE
301: GWTGLSVVIE GRLFVISEYE RMKVKVYDAE ADSWDSVSGP PMPERIMKPF SVSCLDSKIV VVGRGLHVAI GHVQKEPAGD PDSRSSGYSI CWQDVDAPKE
401: FSDLTPSSSQ ILHA

Best Arabidopsis Sequence Match ( AT1G30090.1 )
(BLAST)

001: MQRVRVSSQR AVVHKLGDSQ MTLSPKFRVA ASIQSTLFDR SSELELSLRG EPLIPGLPDD VALNCLLRVP VQSHVSSKSV CKRWHLLFGT KETFFAKRKE
101: FGFKDPWLFV VGFSRCTGKI QWKVLDLRNL TWHEIPAMPC RDKVCPHGFR SVSMPREGTM FVCGGMVSDS DCPLDLVLKY DMVKNHWTVT NKMITARSFF
201: ASGVIDGMIY AAGGNAADLY ELDCAEVLNP LDGNWRPVSN MVAHMASYDT AVLNGKLLVT EGWLWPFFVS PRGQVYDPRT DQWETMSMGL REGWTGTSVV
301: IYDRLFIVSE LERMKMKVYD PVTDSWETIN GPELPEQICR PFAVNCYGNR VYVVGRNLHL AVGNIWQSEN KFAVRWEVVE SPERYADITP SNSQILFA

Arabidopsis Description

F-box/kelch-repeat protein At1g30090 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.