Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046278 | Potato | cytosol | 51.01 | 98.7 |
| Zm00001d008278_P001 | Maize | cytosol | 83.89 | 98.43 |
| PGSC0003DMT400054299 | Potato | cytosol | 73.15 | 96.46 |
| Bra025438.1-P | Field mustard | cytosol | 73.15 | 96.46 |
| KRH18664 | Soybean | cytosol | 83.89 | 89.29 |
| Solyc10g081170.1.1 | Tomato | extracellular | 86.58 | 86.58 |
| VIT_08s0040g00470.t01 | Wine grape | cytosol | 86.58 | 86.58 |
| Solyc11g072240.1.1 | Tomato | cytosol | 85.91 | 85.91 |
| KRG94975 | Soybean | nucleus | 85.91 | 85.91 |
| PGSC0003DMT400018569 | Potato | cytosol | 85.91 | 85.91 |
| Bra020155.1-P | Field mustard | cytosol | 85.91 | 85.91 |
| Solyc12g099990.1.1 | Tomato | nucleus | 85.91 | 85.91 |
| Bra014671.1-P | Field mustard | cytosol | 85.91 | 85.91 |
| Bra006595.1-P | Field mustard | cytosol | 85.91 | 85.91 |
| PGSC0003DMT400058435 | Potato | cytosol | 85.91 | 85.91 |
| Bra003251.1-P | Field mustard | cytosol | 85.91 | 85.91 |
| Bra002368.1-P | Field mustard | cytosol | 85.91 | 85.91 |
| Bra000214.1-P | Field mustard | cytosol | 85.91 | 85.91 |
| PGSC0003DMT400070437 | Potato | cytosol | 85.91 | 85.91 |
| AT5G21274.1 | Thale cress | cytosol | 85.91 | 85.91 |
| AT3G56800.1 | Thale cress | cytosol | 85.91 | 85.91 |
| Solyc01g008950.2.1 | Tomato | nucleus | 85.91 | 85.91 |
| Solyc10g077010.1.1 | Tomato | cytosol | 85.91 | 85.91 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 69.8 | 85.25 |
| CDY65072 | Canola | cytosol | 85.23 | 85.23 |
| CDY56411 | Canola | cytosol | 85.23 | 85.23 |
| Bra019453.1-P | Field mustard | cytosol | 85.23 | 85.23 |
| CDY04474 | Canola | cytosol | 85.23 | 85.23 |
| Bra012037.1-P | Field mustard | cytosol | 85.23 | 85.23 |
| Bra007269.1-P | Field mustard | cytosol | 85.23 | 85.23 |
| CDY55678 | Canola | cytosol | 84.56 | 84.56 |
| Zm00001d047597_P001 | Maize | cytosol | 83.22 | 84.35 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 86.58 | 84.31 |
| CDX96148 | Canola | cytosol | 83.89 | 83.89 |
| Bra004166.1-P | Field mustard | cytosol | 83.89 | 83.89 |
| CDX92401 | Canola | cytosol | 75.17 | 83.58 |
| CDY12321 | Canola | cytosol | 81.21 | 83.45 |
| Bra034981.1-P | Field mustard | cytosol | 81.21 | 83.45 |
| CDX99690 | Canola | cytosol | 83.22 | 83.22 |
| CDY27651 | Canola | cytosol | 83.22 | 82.67 |
| CDX75970 | Canola | cytosol | 61.74 | 80.7 |
| AT2G41110.2 | Thale cress | cytosol | 85.91 | 79.5 |
| AT1G66410.2 | Thale cress | cytosol | 84.56 | 79.25 |
| Zm00001d038543_P004 | Maize | plastid | 85.23 | 75.15 |
| TraesCS2B01G113800.2 | Wheat | cytosol | 86.58 | 73.71 |
| Bra034317.1-P | Field mustard | cytosol | 86.58 | 72.07 |
| CDY48191 | Canola | cytosol | 86.58 | 72.07 |
| AT5G37780.3 | Thale cress | cytosol | 84.56 | 72.0 |
| CDX77060 | Canola | cytosol | 86.58 | 71.67 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 82.55 | 71.1 |
| AT2G27030.3 | Thale cress | cytosol | 85.91 | 70.72 |
| KRG89812 | Soybean | cytosol, mitochondrion | 77.85 | 70.3 |
| Zm00001d028948_P001 | Maize | cytosol | 85.23 | 64.47 |
| CDY57144 | Canola | cytosol | 63.09 | 64.38 |
| CDY30947 | Canola | cytosol | 84.56 | 60.29 |
| HORVU2Hr1G016740.4 | Barley | cytosol | 86.58 | 60.0 |
| AT3G43810.2 | Thale cress | cytosol | 85.91 | 59.81 |
| Zm00001d052415_P001 | Maize | cytosol | 62.42 | 58.86 |
| Zm00001d043144_P001 | Maize | plasma membrane | 71.81 | 58.47 |
| CDY21220 | Canola | cytosol | 83.89 | 56.56 |
| Zm00001d041430_P001 | Maize | cytosol | 61.74 | 54.44 |
| Zm00001d033980_P001 | Maize | cytosol | 55.03 | 52.23 |
| Zm00001d005003_P002 | Maize | cytosol | 61.74 | 51.11 |
| Zm00001d010649_P001 | Maize | extracellular | 40.94 | 42.96 |
| AT2G41090.1 | Thale cress | cytosol | 55.03 | 42.93 |
| Zm00001d035095_P001 | Maize | cytosol, extracellular, mitochondrion | 41.61 | 41.89 |
| Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 40.94 | 41.22 |
| Zm00001d053188_P001 | Maize | cytosol | 28.19 | 38.53 |
| Zm00001d014271_P001 | Maize | cytosol | 42.28 | 35.2 |
| Zm00001d039110_P001 | Maize | cytosol | 38.93 | 33.72 |
| Zm00001d022160_P003 | Maize | cytosol, mitochondrion | 38.26 | 33.14 |
| Zm00001d044411_P001 | Maize | plastid | 38.26 | 24.36 |
| AT2G41100.1 | Thale cress | cytosol | 52.35 | 24.07 |
Protein Annotations
| EnsemblPlants:Zm00001d038545_P001 | EnsemblPlants:Zm00001d038545_T001 | EnsemblPlantsGene:Zm00001d038545 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 |
| PANTHER:PTHR23050:SF250 | PFAM:PF13499 | PFAM:PF13833 | PFscan:PS50222 | ProteinID:AQK86891.1 | ScanProsite:PS00018 |
| SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000844A53B | UniProt:A0A1D6M749 | MapMan:35.1 | : |
Description
calmodulin1Calmodulin
Coordinates
chr6:-:159656851..159657300
Molecular Weight (calculated)
16881.0 Da
IEP (calculated)
4.053
GRAVY (calculated)
-0.474
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMDPLMRRL FFPNTNPSLV YSPSAGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAKR RGKRVMAAKR SSNSAEYKEK NGRRKSHCRI L
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAKR RGKRVMAAKR SSNSAEYKEK NGRRKSHCRI L
Arabidopsis Description
CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.