Factsheet for Zm00001d014011_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d033980_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT2G28380.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT2G28380.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT2G28380.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT2G28380.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT2G28380.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT2G28380.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT2G28380.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT2G28380.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT2G28380.1	Zm00001d052415_P001	AT2G41090.1	17360592
AT2G28380.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT2G28380.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT2G28380.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT2G28380.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT2G28380.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT2G28380.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT2G28380.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT2G28380.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT2G28380.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT2G28380.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT2G28380.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT2G28380.1	Zm00001d005003_P002	AT5G21274.1	17360592
AT2G28380.1	Zm00001d008278_P001	AT5G21274.1	17360592
AT2G28380.1	Zm00001d010649_P001	AT5G21274.1	17360592
AT2G28380.1	Zm00001d028948_P001	AT5G21274.1	17360592
AT2G28380.1	Zm00001d038543_P004	AT5G21274.1	17360592
AT2G28380.1	Zm00001d038545_P001	AT5G21274.1	17360592
AT2G28380.1	Zm00001d041430_P001	AT5G21274.1	17360592
AT2G28380.1	Zm00001d043144_P001	AT5G21274.1	17360592
AT2G28380.1	Zm00001d047597_P001	AT5G21274.1	17360592
AT2G28380.1	Zm00001d052415_P001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032679_P001	Maize	nucleus	82.12	82.91
KXG38314	Sorghum	mitochondrion, nucleus	83.85	80.74
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	22.88	76.77
KRG90046	Soybean	nucleus	12.5	72.22
Os10t0480500-01	Rice	cytosol, nucleus, plastid	70.77	71.6
HORVU1Hr1G041820.1	Barley	nucleus	70.38	69.45
TraesCS1A01G157700.3	Wheat	nucleus	69.81	69.01
TraesCS1D01G155300.1	Wheat	nucleus	70.38	68.8
TraesCS1B01G174000.1	Wheat	nucleus	69.62	68.69
KRH58007	Soybean	nucleus	11.73	67.78
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	45.38	57.14
KRH25014	Soybean	cytosol, nucleus, plastid	42.69	55.36
PGSC0003DMT400020800	Potato	nucleus	43.46	55.26
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	47.88	55.21
KRH29911	Soybean	cytosol, nucleus, plastid	43.08	54.5
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	41.15	54.45
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	46.15	54.18
Solyc11g069460.1.1	Tomato	nucleus	42.5	53.38
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	42.12	53.28
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	44.04	53.26
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	44.04	53.26
AT2G28380.1	Thale cress	cytosol	44.23	53.0
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	47.5	52.55
CDY15737	Canola	cytosol	43.08	51.73
Bra035704.1-P	Field mustard	nucleus	43.08	51.73
CDY30490	Canola	nucleus	43.08	51.61
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	42.88	51.5
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	30.77	45.2
PGSC0003DMT400060309	Potato	cytosol, nucleus, plastid	40.96	42.09
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	41.15	38.7
Zm00001d024861_P007	Maize	nucleus	29.81	30.16
Zm00001d022648_P001	Maize	mitochondrion, nucleus	10.38	21.95
Zm00001d005065_P002	Maize	cytosol	14.04	16.82
Zm00001d032326_P002	Maize	cytosol, plastid	9.81	14.09
Zm00001d052326_P001	Maize	cytosol	9.42	13.57

Protein Annotations

EMBL:BT088326	EnsemblPlants:Zm00001d014011_P001	EnsemblPlants:Zm00001d014011_T001	EnsemblPlantsGene:Zm00001d014011	EntrezGene:100502483	Gene3D:3.30.160.20
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom
PANTHER:PTHR10910	PANTHER:PTHR10910:SF141	PFAM:PF00035	PFscan:PS50137	ProteinID:AQK65037.1	SEG:seg
SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0001A4BE83	UniProt:C4JBX9	MapMan:35.1	:

Description

Double-stranded RNA-binding protein 2

Coordinates

chr5:+:28545551..28551393

Molecular Weight (calculated)

56342.7 Da

IEP (calculated)

10.107

GRAVY (calculated)

-0.428

Length

520 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCLREGPDHA PRFKAAVNFN GEQFESPGFF TTLRQAEHAA AEVALAALAR RGPSYSLAAR ILDETGVYKN LLQEVAQRVG
101: APLPLYTTER SGLGHLPVFT CTVELAGITF AGDPAKNKKQ AEKNAASAAW SALKQLVREE VNSSNEPENI DEQEQIRIAR ALLNYRLKEK MAMANYPHVS
201: PFPKKFPMQQ ERKPCLGQSC QSSHSKILPL FRPKPNSRPK SPASTDGVSK TPGRTVESLV DQSPRSRFPA AEAAPYVPVG HYRRIPCHNM APSVTIRTAV
301: PVFSAPPLPP PPARLQQLPP LMSHPPPIRM ASPVRMRPAP ASPMFASSSP VQVPKPVMPV QLKDVQDHPR KEAVPLPPVI PVQVKDAQCR PRKSSMSPVI
401: PVPVKDAQRR PAAIPVQMKD VQTQAPKEPL AAPIPAARPS VMTDTPAQVK EASAGATSEA PSSATGNNAA VECSASSETV LARQSGAADE DTLVLMRKLS
501: MRPEAQSAAE AATTMRLETN

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.