Factsheet for Zm00001d022648_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d022648_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	Zm00001d022648_P001	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G527500.1	Wheat	mitochondrion, nucleus	31.71	44.32
VIT_08s0056g01550.t01	Wine grape	plastid	26.02	38.55
KXG33474	Sorghum	mitochondrion	74.8	36.51
Os01t0772000-01	Rice	mitochondrion, nucleus	54.06	30.16
TraesCS3B01G341600.1	Wheat	mitochondrion, nucleus	47.97	21.65
HORVU3Hr1G075340.1	Barley	mitochondrion	50.0	21.54
TraesCS3A01G295400.2	Wheat	nucleus	49.59	20.1
TraesCS3B01G341800.9	Wheat	mitochondrion, nucleus	49.19	19.97
TraesCS3D01G307700.5	Wheat	mitochondrion, nucleus	48.78	19.8
TraesCS3B01G341700.4	Wheat	mitochondrion, nucleus	48.78	19.8
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	23.17	19.79
KRH57881	Soybean	nucleus	36.99	18.06
Bra007702.1-P	Field mustard	nucleus	23.98	17.88
CDY11449	Canola	nucleus	23.98	17.82
CDX76663	Canola	cytosol	23.98	17.61
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.17	16.1
AT3G62800.1	Thale cress	nucleus	21.95	15.21
Zm00001d005065_P002	Maize	cytosol	20.73	11.75
Zm00001d032326_P002	Maize	cytosol, plastid	17.07	11.6
Zm00001d024861_P007	Maize	nucleus	22.76	10.89
Zm00001d032679_P001	Maize	nucleus	21.95	10.49
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	21.95	10.38
Zm00001d052326_P001	Maize	cytosol	8.13	5.54

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A1D6IQ06	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	ProteinID:ONM61314.1	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910
PANTHER:PTHR10910:SF114	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00022092C6	EnsemblPlantsGene:Zm00001d022648	EnsemblPlants:Zm00001d022648_P001
EnsemblPlants:Zm00001d022648_T001	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

Double-stranded RNA-binding protein 4

Coordinates

chr7:+:182367072..182370483

Molecular Weight (calculated)

26766.0 Da

IEP (calculated)

9.801

GRAVY (calculated)

-0.361

Length

246 amino acids

Sequence
(BLAST)

001: MYKSRLQELC QKRRWASSLY EPTREGPAHA PLFHATVIVN GERFSSRDEG EKSLKEAYNL TAMAAFDNLI PLPAVALAPA APAPPPSETQ LPYKSQLQIY
101: AQKRGKLLPS YRLIRVGSLG APLFKSEVTI DGQTFESPEY CHTIKEAETV AAKVALMSLP QEANPTQQLL VGLDVSNYSA GFVSTVEIQG VTFHGKRGNT
201: KKQAEMNAAK SAFEHLKTDA GLVSLSRGDG KRRHNMRAAA QAALGA

Best Arabidopsis Sequence Match ( AT5G41070.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS

Arabidopsis Description

DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.