Factsheet for TraesCS3B01G341700.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G295400.2
TraesCS3A01G527500.1
TraesCS3B01G341600.1
TraesCS3B01G341700.4
TraesCS3B01G341800.9
TraesCS3D01G307700.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	TraesCS3A01G295400.2	AT3G62800.1	21798944
AT3G62800.1	TraesCS3A01G527500.1	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341600.1	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341700.4	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341800.9	AT3G62800.1	21798944
AT3G62800.1	TraesCS3D01G307700.5	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G341800.9	Wheat	mitochondrion, nucleus	97.85	97.85
TraesCS3B01G341600.1	Wheat	mitochondrion, nucleus	87.46	97.25
TraesCS3A01G295400.2	Wheat	nucleus	95.71	95.55
TraesCS3D01G307700.5	Wheat	mitochondrion, nucleus	95.38	95.38
HORVU3Hr1G075340.1	Barley	mitochondrion	82.01	87.04
Zm00001d022648_P001	Maize	mitochondrion, nucleus	19.8	48.78
Os01t0772000-01	Rice	mitochondrion, nucleus	34.82	47.85
KXG33474	Sorghum	mitochondrion	37.79	45.44
VIT_08s0056g01550.t01	Wine grape	plastid	10.73	39.16
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	13.7	28.82
Bra007702.1-P	Field mustard	nucleus	14.19	26.06
CDX76663	Canola	cytosol	14.19	25.67
CDY11449	Canola	nucleus	13.86	25.38
KRH57881	Soybean	nucleus	19.47	23.41
AT3G62800.1	Thale cress	nucleus	13.53	23.1
TraesCS5B01G289100.1	Wheat	nucleus	12.21	20.22
TraesCS6B01G200200.1	Wheat	nucleus	7.92	15.84
TraesCS1B01G119000.1	Wheat	nucleus	14.36	15.05
TraesCS1B01G174000.1	Wheat	nucleus	12.21	14.04
TraesCS5B01G148100.2	Wheat	nucleus	11.06	12.64
TraesCS5B01G148000.1	Wheat	plastid	4.95	8.72

Protein Annotations

EnsemblPlants:TraesCS3B01G341700.4	EnsemblPlantsGene:TraesCS3B01G341700	Gene3D:3.30.160.20	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910
PANTHER:PTHR10910:SF114	PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
TIGR:cd00048	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:548550300..548556123

Molecular Weight (calculated)

65719.9 Da

IEP (calculated)

4.630

GRAVY (calculated)

-0.569

Length

606 amino acids

Sequence
(BLAST)

001: MSKAQLNQLC QQRRWPAPDY THRSEGPAHS LRFRATVTVN GEVYHSPDDG DGFSTAKEAQ NLAAKAAFER LSALPPPPPP QSETQLPYKS QLQVYAQKRH
101: KDLPSYDTIR SGPLHAPLFR STVTIDGHKF ESPQDYHTTK EAEFAAARVA LMSLCQEANP SEQMPAGSAS CISLPGIQIN HKLQLQMYAQ KRGKQLPWYD
201: RIQEGPSHAP RFKSIVTIDG QTFESPQYCH TIKEAEYAAA NLALVSLAQE VSSEEQLPVQ GMQYTNPRHE LAEKEGSSLP VCNTSSDNLK NSSISKSTVH
301: TLGESFQEGP GNTKKQKQMM VAPFQPSKDI GSQMQQGTET LTEQEVKTVE SDSSFPQVSM GTSDGQNDSN ATEHDSCSVG SRIDLPVADK TQSLDEPIKS
401: GSMENVKPAA PEPSIKAEVI DLTQECRSPP LVSVPPTDML NLVATTSTVP VALQSPVETI QPVKMENDKP AIPEPSTEAE VMDVAEPSAE AEVDVPEPSI
501: KAEGMDVAEP SAEAEVDVPE PSIEDEVMNS TPEHTSLPLG SMPPTNTSNL AAKATAVPVD SARCSYSMST NRIQIYPCRP DLKLPEGATV LPFSDGKWVA
601: VSLPLP

Best Arabidopsis Sequence Match ( AT3G62800.1 )
(BLAST)

001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP

Arabidopsis Description

DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.