Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G091200.2 | Wheat | nucleus | 94.98 | 96.32 |
| TraesCS1D01G099700.1 | Wheat | nucleus | 92.21 | 93.34 |
| HORVU1Hr1G021530.1 | Barley | nucleus | 91.52 | 91.21 |
| KXG21311 | Sorghum | nucleus | 64.01 | 64.57 |
| Os05t0150400-01 | Rice | cytosol, nucleus | 67.3 | 64.51 |
| Zm00001d024861_P007 | Maize | nucleus | 55.88 | 62.84 |
| TraesCS5B01G289100.1 | Wheat | nucleus | 26.82 | 42.35 |
| KRH68665 | Soybean | nucleus | 34.43 | 36.92 |
| GSMUA_Achr5P00420_001 | Banana | nucleus | 35.99 | 36.24 |
| KRG96921 | Soybean | nucleus | 33.05 | 35.5 |
| VIT_14s0030g01280.t01 | Wine grape | nucleus | 35.29 | 35.42 |
| TraesCS1B01G174000.1 | Wheat | nucleus | 27.51 | 30.17 |
| VIT_05s0020g01850.t01 | Wine grape | nucleus | 34.78 | 24.33 |
| TraesCS6B01G200200.1 | Wheat | nucleus | 8.48 | 16.17 |
| TraesCS3B01G341600.1 | Wheat | mitochondrion, nucleus | 14.36 | 15.23 |
| TraesCS5B01G148100.2 | Wheat | nucleus | 13.67 | 14.91 |
| TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 15.05 | 14.36 |
| TraesCS3B01G341800.9 | Wheat | mitochondrion, nucleus | 15.05 | 14.36 |
| TraesCS5B01G148000.1 | Wheat | plastid | 7.79 | 13.08 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G119000.1 | EnsemblPlantsGene:TraesCS1B01G119000 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF104 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:139670881..139675164
Molecular Weight (calculated)
63355.3 Da
IEP (calculated)
9.252
GRAVY (calculated)
-0.686
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKNQLQELA QRSCFNLPSY ACIREGPDHA PRFKATVTFN GESFESPGFY PTLRQAEHAA AEVALNELSK RGPSSSLAAK VLDETGIYKN LLQETAHRAG
101: LKLPMYTTIR SGPGHTPTFT CTVELAGRIF TGNPGKTKKQ AQKNAAMVAW SELKQLPLVG EAASVGEAAS SSSPSDHDKE QEQVTVTRTL ENLDRKNEGK
201: ASHQKEKQQS NNRSQSRRSY PKPHVSFYGS HLQNQMYPNV APEQAMYHMW NQVQAAQQKP HLPMVQAMGN TRFQPPPTML SMYPPPPRRQ FAVPASQDAL
301: ALLPCFPETA PVLPRYFSPY PATYVSRSPL PVTVHTVHRE RQGYTETVEL PDAAVLSEYT ALDSSSTPEN VGPSQVQQWP ENGKEVYTES SAASVEENKA
401: SQTLSSSTAH PLSQKLEPNQ DDKESKKPAE QPPKPSLSHA GSSVVQRPVQ RQGYSSPVQH GEPIHRSNLP FSRATSPELW PLDMQAPARY GAATPMSSSG
501: LLYQQRPPWL AAPVTVRTSI PVCSARPNAA VVNSSPGAAA RARPAVQILS REDPEAHRNT RHVGDASTAS SELNKLHM
101: LKLPMYTTIR SGPGHTPTFT CTVELAGRIF TGNPGKTKKQ AQKNAAMVAW SELKQLPLVG EAASVGEAAS SSSPSDHDKE QEQVTVTRTL ENLDRKNEGK
201: ASHQKEKQQS NNRSQSRRSY PKPHVSFYGS HLQNQMYPNV APEQAMYHMW NQVQAAQQKP HLPMVQAMGN TRFQPPPTML SMYPPPPRRQ FAVPASQDAL
301: ALLPCFPETA PVLPRYFSPY PATYVSRSPL PVTVHTVHRE RQGYTETVEL PDAAVLSEYT ALDSSSTPEN VGPSQVQQWP ENGKEVYTES SAASVEENKA
401: SQTLSSSTAH PLSQKLEPNQ DDKESKKPAE QPPKPSLSHA GSSVVQRPVQ RQGYSSPVQH GEPIHRSNLP FSRATSPELW PLDMQAPARY GAATPMSSSG
501: LLYQQRPPWL AAPVTVRTSI PVCSARPNAA VVNSSPGAAA RARPAVQILS REDPEAHRNT RHVGDASTAS SELNKLHM
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.