Factsheet for TraesCS6B01G200200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G161700.2	Wheat	nucleus	95.71	96.03
TraesCS6A01G172500.1	Wheat	cytosol	89.77	95.77
Os08t0384100-01	Rice	cytosol	45.54	44.23
EES14943	Sorghum	nucleus	41.91	42.62
KRH63090	Soybean	nucleus	18.81	36.54
Zm00001d032326_P002	Maize	cytosol, plastid	42.9	35.91
KRH62980	Soybean	nucleus	20.79	31.66
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	19.14	29.29
PGSC0003DMT400088113	Potato	nucleus	15.18	26.74
PGSC0003DMT400014406	Potato	nucleus	18.48	25.93
VIT_14s0006g01440.t01	Wine grape	nucleus	28.05	25.53
GSMUA_Achr2P22850_001	Banana	cytosol	24.75	24.27
KRH01275	Soybean	nucleus	23.1	20.96
KRH30959	Soybean	mitochondrion	18.81	20.65
PGSC0003DMT400085647	Potato	cytosol, nucleus	17.82	20.38
KRH15123	Soybean	nucleus	24.09	15.9
TraesCS5B01G289100.1	Wheat	nucleus	17.82	14.75
KRH73012	Soybean	nucleus	13.53	14.04
TraesCS5B01G148100.2	Wheat	nucleus	19.47	11.13
TraesCS1B01G174000.1	Wheat	nucleus	19.14	11.01
TraesCS3B01G341600.1	Wheat	mitochondrion, nucleus	15.84	8.81
TraesCS1B01G119000.1	Wheat	nucleus	16.17	8.48
TraesCS3B01G341800.9	Wheat	mitochondrion, nucleus	16.17	8.09
TraesCS3B01G341700.4	Wheat	mitochondrion, nucleus	15.84	7.92
TraesCS5B01G148000.1	Wheat	plastid	8.91	7.85

Protein Annotations

EnsemblPlants:TraesCS6B01G200200.1	EnsemblPlantsGene:TraesCS6B01G200200	Gene3D:3.30.160.20	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR11207
PANTHER:PTHR11207:SF8	PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
TIGR:cd00048	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:240038358..240043395

Molecular Weight (calculated)

32862.0 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.398

Length

303 amino acids

Sequence
(BLAST)

001: MATTAAAAAA VPDAIPAAAP AAPSAQPHPV PDKCTNYKNH LQEWTQRNDQ KLPAYNTESK RDHRRLEFRS TVEVGGERFQ SARNHSRRKD AEQDAARVAY
101: ETLVTKTIIS DDDHTDALGL IDQGVVFCKS ILHEFAVKTK AEQPTYSADH REGVSPMPLF VSSVLFAGNT YTGEAATCKK DAEQKAARVA VKSILATKNT
201: CMHQIVRSKK ELIIAITSSG FNKERGVVSQ ENCNAPTNAI TLIKFVPAGE AAGLTADQGA TNVPEDDPCA QAVSGSEKCK KHRKVSLSMM VEVKGLLVMW
301: RCV

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.