CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032326_P002	Maize	cytosol, plastid	80.87	66.57
TraesCS6A01G172500.1	Wheat	cytosol	44.63	46.83
TraesCS6D01G161700.2	Wheat	nucleus	43.62	43.05
TraesCS6B01G200200.1	Wheat	nucleus	42.62	41.91
KRH63090	Soybean	nucleus	21.14	40.38
Os08t0384100-01	Rice	cytosol	39.93	38.14
KRH62980	Soybean	nucleus	22.48	33.67
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	19.8	29.8
PGSC0003DMT400088113	Potato	nucleus	16.44	28.49
VIT_14s0006g01440.t01	Wine grape	nucleus	30.87	27.63
PGSC0003DMT400014406	Potato	nucleus	19.8	27.31
GSMUA_Achr2P22850_001	Banana	cytosol	24.5	23.62
EES16051	Sorghum	cytosol	14.77	22.22
PGSC0003DMT400085647	Potato	cytosol, nucleus	19.46	21.89
KRH01275	Soybean	nucleus	21.14	18.86
KRH30959	Soybean	mitochondrion	17.45	18.84
EER88251	Sorghum	cytosol, mitochondrion, nucleus	14.43	17.7
OQU82704	Sorghum	cytosol, nucleus	19.46	17.63
KRH15123	Soybean	nucleus	25.84	16.78
KRH73012	Soybean	nucleus	16.11	16.44
KXG22802	Sorghum	mitochondrion	22.82	15.74
KXG33474	Sorghum	mitochondrion	17.79	10.52
KXG38314	Sorghum	mitochondrion, nucleus	17.79	9.81
KXG21311	Sorghum	nucleus	15.77	8.2
EES09107	Sorghum	cytosol	7.38	6.09

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	EntrezGene:8070014	UniProt:C5YKL8	EnsemblPlants:EES14943	ProteinID:EES14943
ProteinID:EES14943.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0003824
GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030422	GO:GO:0031053	GO:GO:0031054
GO:GO:0040029	GO:GO:0090502	InterPro:IPR014720	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR11207
PANTHER:PTHR11207:SF8	SMART:SM00358	EnsemblPlantsGene:SORBI_3007G118000	SUPFAM:SSF54768	unigene:Sbi.1579	UniParc:UPI0001A87A13
RefSeq:XP_002445448.1	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:51090518..51095669

Molecular Weight (calculated)

31416.2 Da

IEP (calculated)

9.873

GRAVY (calculated)

-0.243

Length

298 amino acids

Sequence
(BLAST)

001: MAAAATAATA EIGTAVTATS SEMEATATAI TTAAAAGPPP AIPDKYMHKN RLQSFAERTY KKPPVYKVES EGASHQPKFR CTVEVGGQQF SSAGSFDRKK
101: EAEQDAARIA YEILSAVGED DIKEAFGLID QDAVFCKSIL NEFAVKTKTT WPSYSLVYIE KPLTLFAAIV VFDGNSYTGE SARNKKDAEQ NAARAVIKSI
201: LAKHNTCMVG IVRSKKQLIT AVKSSGSSPA TFTPIQFTRP VSHAAFGGPD HVAPMLQNAS SSLAVQGGTN AVPAVGTSAN PSSANVGHSK SKKRKGRV

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.