Factsheet for Solyc03g118950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014406	Potato	nucleus	74.24	68.06
KRH63090	Soybean	nucleus	27.78	35.26
KRH62980	Soybean	nucleus	32.83	32.66
VIT_14s0006g01440.t01	Wine grape	nucleus	41.41	24.62
GSMUA_Achr2P22850_001	Banana	cytosol	37.37	23.95
TraesCS6A01G172500.1	Wheat	cytosol	30.3	21.13
EES14943	Sorghum	nucleus	29.8	19.8
TraesCS6D01G161700.2	Wheat	nucleus	29.8	19.54
TraesCS6B01G200200.1	Wheat	nucleus	29.29	19.14
Solyc02g091460.2.1	Tomato	nucleus	17.68	19.13
Os08t0384100-01	Rice	cytosol	29.8	18.91
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	26.77	18.4
KRH01275	Soybean	nucleus	30.81	18.26
KRH30959	Soybean	mitochondrion	22.73	16.3
Zm00001d032326_P002	Maize	cytosol, plastid	28.79	15.75
KRH15123	Soybean	nucleus	35.86	15.47
Solyc11g069460.1.1	Tomato	nucleus	28.28	13.53
KRH73012	Soybean	nucleus	19.19	13.01
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	24.75	11.32
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	28.79	10.31
Solyc01g009190.1.1	Tomato	nucleus	22.22	9.95
TraesCS5A01G149300.1	Wheat	cytosol, plastid	10.61	6.1
Zm00001d052326_P001	Maize	cytosol	11.11	6.09
TraesCS5B01G148000.1	Wheat	plastid	10.1	5.81
EES09107	Sorghum	cytosol	9.6	5.26

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030422	GO:GO:0031053
GO:GO:0031054	GO:GO:0040029	GO:GO:0090502	InterPro:IPR014720	UniProt:K4BM44	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF8	SMART:SM00358	SUPFAM:SSF54768	EnsemblPlantsGene:Solyc03g118950.1
EnsemblPlants:Solyc03g118950.1.1	UniParc:UPI00027661B3	InterPro:dsRBD_dom	:	:	:

Description

No Description!

Coordinates

chr3:+:67706003..67707289

Molecular Weight (calculated)

22444.3 Da

IEP (calculated)

9.240

GRAVY (calculated)

-0.323

Length

198 amino acids

Sequence
(BLAST)

001: MGKNVPPAQV MYKNQLQEYT QKNVKQLPIY QTVNEGFPHA PKFRAKVLVN GSEYESKSTY PTKKEAEQAV AKIAYECIHS EMDARDISLI YKEPMLCKSI
101: LYEFAVKRNL DRPIYNTRHT EGTSSVYICH LVLGGKTYKG ELAGSKQMAK QVAAQSAIES LLGMYVDSLV FLYLQCLKER FTRSSCPKIS VILVCKPE

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.