Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g118950.1.1 | Tomato | cytosol, nucleus, plastid | 19.13 | 17.68 |
| GSMUA_Achr2P22850_001 | Banana | cytosol | 26.78 | 15.86 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 20.22 | 12.85 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 21.31 | 9.01 |
| Solyc11g069460.1.1 | Tomato | nucleus | 19.13 | 8.45 |
| Solyc05g056100.2.1 | Tomato | cytosol, nucleus, plastid | 18.58 | 6.15 |
| Solyc01g009190.1.1 | Tomato | nucleus | 14.75 | 6.11 |
Protein Annotations
| Gene3D:3.30.160.20 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003725 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030422 | GO:GO:0031053 |
| GO:GO:0031054 | GO:GO:0040029 | GO:GO:0090502 | InterPro:IPR014720 | UniProt:K4BCU4 | PFAM:PF00035 |
| PFscan:PS50137 | PANTHER:PTHR11207 | PANTHER:PTHR11207:SF8 | SMART:SM00358 | SUPFAM:SSF54768 | EnsemblPlantsGene:Solyc02g091460.2 |
| EnsemblPlants:Solyc02g091460.2.1 | UniParc:UPI000276799C | InterPro:dsRBD_dom | : | : | : |
Description
No Description!
Coordinates
chr2:-:52744997..52751146
Molecular Weight (calculated)
20588.5 Da
IEP (calculated)
6.961
GRAVY (calculated)
-0.517
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVNTVTQS SEQPIEMAEV NTVTKCSEQP IEMTEVNTVT QSSEQPIKMA EVNSVTQSSE QSIKMAEHVI IQNPQPNISE TEKGRRRYIH VEFIHKNRLQ
101: ELTQRSSLGR PVYHTVNAGP PHAPLFRSSV LVDGVWYTSP NTFSHVKAAE HDAAKVALIG VKEKLKHEGC PLIRYSVLQV YPK
101: ELTQRSSLGR PVYHTVNAGP PHAPLFRSSV LVDGVWYTSP NTFSHVKAAE HDAAKVALIG VKEKLKHEGC PLIRYSVLQV YPK
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.