Factsheet for Solyc11g069460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT2G28380.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT2G28380.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT2G28380.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT2G28380.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT2G28380.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT2G28380.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT2G28380.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT2G28380.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT2G28380.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT2G28380.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT2G28380.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT2G28380.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT2G28380.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT2G28380.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT2G28380.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT2G28380.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020800	Potato	nucleus	94.2	95.35
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	30.68	81.94
KRG90046	Soybean	nucleus	16.43	75.56
KRH58007	Soybean	nucleus	15.7	72.22
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	64.01	64.16
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	63.04	63.5
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	59.66	62.85
KRH25014	Soybean	cytosol, nucleus, plastid	60.87	62.84
KRH29911	Soybean	cytosol, nucleus, plastid	60.39	60.83
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.42	57.21
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	59.42	57.21
AT2G28380.1	Thale cress	cytosol	58.94	56.22
Bra035704.1-P	Field mustard	nucleus	58.45	55.89
CDY30490	Canola	nucleus	58.45	55.76
CDY15737	Canola	cytosol	57.97	55.43
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	57.97	55.43
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	57.0	52.33
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	55.31	51.69
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	58.21	51.28
Zm00001d032679_P001	Maize	nucleus	54.35	43.69
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	57.25	42.86
Os10t0480500-01	Rice	cytosol, nucleus, plastid	53.14	42.8
TraesCS1B01G174000.1	Wheat	nucleus	54.11	42.5
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	53.38	42.5
HORVU1Hr1G041820.1	Barley	nucleus	53.86	42.31
TraesCS1A01G157700.3	Wheat	nucleus	53.62	42.21
TraesCS1D01G155300.1	Wheat	nucleus	54.11	42.11
KXG38314	Sorghum	mitochondrion, nucleus	53.86	41.3
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	13.53	28.28
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	19.32	27.78
Solyc02g091460.2.1	Tomato	nucleus	8.45	19.13
Solyc01g009190.1.1	Tomato	nucleus	18.84	17.65
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	15.22	14.55

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0035196	GO:GO:0040029	GO:GO:0070919	InterPro:IPR014720	UniProt:K4DAA2
PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141	SMART:SM00358	SUPFAM:SSF54768
EnsemblPlantsGene:Solyc11g069460.1	EnsemblPlants:Solyc11g069460.1.1	UniParc:UPI000276A943	InterPro:dsRBD_dom	SEG:seg	:

Description

Double-stranded RNA-binding protein 2 [Source:Projected from Arabidopsis thaliana (AT2G28380) UniProtKB/Swiss-Prot;Acc:Q9SKN2]

Coordinates

chr11:+:54046873..54053147

Molecular Weight (calculated)

45019.5 Da

IEP (calculated)

9.941

GRAVY (calculated)

-0.496

Length

414 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY VCIREGPDHA PRFKAVVNFN GENFESPHYC STLRQAEHAA AVVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPQYTTYR SGLGHQPVFT GTVELAGITF TGEPAKNKKQ AEKNSALAAW SSLKQLAQQD ASLSSELENN DEQEQIRIAR ALLNYRLKEQ LEMAKSGKVQ
201: IPFQKKFPIP SPRPSSPQRP AVTSSKILPL ICPKTVNRYR SSSATINDSH SSLSQPLPQS QASSSEGRTV STRISHAPGA APPYMPVRQY NRTPYHGIAP
301: PVTIRTAVPV FSAPPRPQPT GCPTQMMQAR SVRVAPPVCI RQAIPVYATP PAKKETVAHA TTTASRPSSQ PEEAMARATI APSRPLAQPK ETGTNAGTEV
401: DESTAMKCLE ELSL

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.