CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	CDX73678	AT3G51920.1	17360592
AT2G28380.1	CDX95314	AT3G51920.1	17360592
AT2G28380.1	CDY23174	AT3G51920.1	17360592
AT2G28380.1	CDY06478	AT4G14640.1	17360592
AT2G28380.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035704.1-P	Field mustard	nucleus	98.15	98.15
CDY30490	Canola	nucleus	97.23	97.0
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	82.91	83.49
CDY15737	Canola	cytosol	81.99	81.99
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	29.33	81.94
KRG90046	Soybean	nucleus	16.17	77.78
AT2G28380.1	Thale cress	cytosol	76.67	76.5
KRH58007	Soybean	nucleus	15.24	73.33
KRH25014	Soybean	cytosol, nucleus, plastid	61.2	66.08
KRH29911	Soybean	cytosol, nucleus, plastid	61.89	65.21
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	60.05	62.95
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	57.97	61.07
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	55.43	61.07
PGSC0003DMT400020800	Potato	nucleus	55.89	59.17
Solyc11g069460.1.1	Tomato	nucleus	55.43	57.97
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	54.73	52.55
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	53.58	52.37
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	54.27	50.0
Os10t0480500-01	Rice	cytosol, nucleus, plastid	52.19	43.97
Zm00001d032679_P001	Maize	nucleus	51.96	43.69
TraesCS1B01G174000.1	Wheat	nucleus	52.89	43.45
HORVU1Hr1G041820.1	Barley	nucleus	52.89	43.45
TraesCS1A01G157700.3	Wheat	nucleus	52.66	43.35
TraesCS1D01G155300.1	Wheat	nucleus	53.12	43.23
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	51.5	42.88
CDY48959	Canola	nucleus	35.33	41.92
CDY12250	Canola	nucleus	33.72	41.6
KXG38314	Sorghum	mitochondrion, nucleus	51.73	41.48
CDY46403	Canola	nucleus	35.8	41.11
CDY00177	Canola	nucleus	33.03	40.62
CDY28511	Canola	nucleus	35.1	40.32
CDY34199	Canola	nucleus	34.41	39.95
CDX76663	Canola	cytosol	22.17	28.66
CDY11449	Canola	nucleus	21.48	28.1
CDX93488	Canola	plastid	17.32	27.27
CDX94957	Canola	cytosol, nucleus, plastid	17.09	26.15
CDY20678	Canola	cytosol	16.4	25.63
CDY31070	Canola	endoplasmic reticulum, golgi	16.17	21.81

Protein Annotations

EnsemblPlants:CDX77176	EnsemblPlantsGene:GSBRNA2T00127810001	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141	PFAM:PF00035
PFscan:PS50137	ProteinID:CDX77176	ProteinID:CDX77176.1	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI0004EE07B0	MapMan:35.1	:	:	:	:

Description

BnaC04g39710D

Coordinates

chrLK031809:-:1727033..1728990

Molecular Weight (calculated)

47242.3 Da

IEP (calculated)

10.118

GRAVY (calculated)

-0.444

Length

433 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFGLPSY TCLREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALGALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SNSMPESENS DELEQVIIAR ALINYRIKEN IGSGSSSSAP
201: VPFANKFFMQ NLRPTSPQPS HATTSRILPF ICPKPSSRTS RSVSAASVER AIAAALENRN YRPPQQRFAA ATPGAAAAPP YVPMRHLRSP CNGIAPPVTI
301: RNSVPVFSAP PPPCANTQQQ QRPSVYVPSM MRNAAPVRIA PPVTIRTAVP VFASAPPQIR KEEALPVRKV NVQTSVKPVV QEREERALSL PDNLEIELEG
401: SAKPVSETDR AALKDSKGEH QTVKERLENL KIW

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.