CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032962.1-P	Field mustard	nucleus	100.0	100.0
CDY28511	Canola	nucleus	94.37	93.37
CDY12250	Canola	nucleus	77.21	82.05
CDY00177	Canola	nucleus	76.14	80.68
AT3G26932.2	Thale cress	nucleus	75.34	78.27
CDY48959	Canola	nucleus	53.62	54.79
CDY46403	Canola	nucleus	53.89	53.32
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	40.75	42.94
TraesCS5A01G290100.2	Wheat	nucleus	40.75	41.87
TraesCS5B01G289100.1	Wheat	nucleus	40.48	41.26
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	41.02	37.87
VIT_14s0068g01520.t01	Wine grape	nucleus	47.19	36.59
Os09t0508500-02	Rice	nucleus	37.53	34.65
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	39.95	34.65
CDY15737	Canola	cytosol	39.95	34.41
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	39.95	34.41
CDY30490	Canola	nucleus	39.95	34.33
CDY11449	Canola	nucleus	23.59	26.59
CDX76663	Canola	cytosol	23.32	25.97
CDX93488	Canola	plastid	17.69	24.0
CDX94957	Canola	cytosol, nucleus, plastid	17.69	23.32
CDY20678	Canola	cytosol	16.62	22.38
CDY31070	Canola	endoplasmic reticulum, golgi	16.62	19.31

Protein Annotations

EnsemblPlants:CDY34199	EnsemblPlantsGene:GSBRNA2T00056191001	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF115	PFAM:PF00035
PFscan:PS50137	ProteinID:CDY34199	ProteinID:CDY34199.1	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI00025457D0	UniProt:A0A078H9M7	MapMan:35.1	:	:	:

Description

BnaA02g28410DBnaA02g28410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9M7]

Coordinates

chrLK032330:+:305177..307069

Molecular Weight (calculated)

41725.7 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.715

Length

373 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKACVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHVPTFS CTVELAGMRF NGESAKTKKQ AEKNAAIAAW FSLRKMPTSL DSQRGEEKER EVVARVLSRF RPKEGRRREQ HHSRRRAIRH
201: DTRDMLCEKL RMINPYTNEA SPSSLKHHQT LLPPRLWPST TNLQQQSKVK SLLEKSQEQA GLKQRSPDDA KPEMIIKSFP LSSMERRNCY SKLLPFPEMF
301: AGGFGLNHQK LAPSVHMRSV IPVCSAPPPK PLSPFNGSNT SSCSAPSSLG TEGQEKKSLM ELELESKSDR THD

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.