CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71472
CDX76438
CDX77068
CDX79083
CDX93488
CDX94046
CDX94957
CDX98696
CDY04478
CDY20678
CDY31070
CDY31421
CDY43132
CDY46403
CDY48959
CDY50692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	CDX93488	AT1G09700.1	15821876
AT1G09700.1	CDX94957	AT1G09700.1	15821876
AT1G09700.1	CDY20678	AT1G09700.1	15821876
AT1G09700.1	CDY31070	AT1G09700.1	15821876
AT1G09700.1	CDX71472	AT2G27100.1	23141542
AT1G09700.1	CDX77068	AT2G27100.1	23141542
AT1G09700.1	CDY04478	AT2G27100.1	23141542
AT1G09700.1	CDY43132	AT3G03300.1	15821876
AT1G09700.1	CDY50692	AT3G03300.1	15821876
AT1G09700.1	CDX76438	AT4G21670.1	23141542
AT1G09700.1	CDX79083	AT4G21670.1	23141542
AT1G09700.1	CDX94046	AT4G21670.1	23141542
AT1G09700.1	CDX98696	AT4G21670.1	23141542
AT1G09700.1	CDY31421	AT4G21670.1	23141542
AT1G09700.1	CDY46403	AT5G41070.1	15821876
AT1G09700.1	CDY48959	AT5G41070.1	15821876
AT1G09700.1	CDY46403	AT5G41070.1	21798944
AT1G09700.1	CDY48959	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030793.1-P	Field mustard	cytosol	96.03	95.68
CDX93488	Canola	plastid	84.12	84.73
CDY31070	Canola	endoplasmic reticulum, golgi	94.95	81.93
CDX94957	Canola	cytosol, nucleus, plastid	81.95	80.21
AT1G09700.1	Thale cress	plastid	78.34	51.79
KRH62246	Soybean	nucleus	54.51	42.06
KRH52961	Soybean	nucleus	54.87	41.87
VIT_18s0001g07670.t01	Wine grape	nucleus	53.07	36.75
OQU82704	Sorghum	cytosol, nucleus	41.88	35.26
GSMUA_Achr11P...	Banana	nucleus	46.21	34.22
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	45.49	31.03
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	38.63	29.72
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	45.49	29.1
Os05t0307400-01	Rice	cytosol	45.85	29.06
KXG22802	Sorghum	mitochondrion	44.77	28.7
Os11t0109900-01	Rice	cytosol	46.57	27.27
TraesCS4D01G132400.1	Wheat	cytosol	39.71	26.96
Zm00001d005065_P002	Maize	cytosol	42.24	26.96
TraesCS4A01G180400.1	Wheat	cytosol	39.35	26.78
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	38.99	26.47
TraesCS5D01G143500.2	Wheat	nucleus	45.13	23.67
TraesCS5B01G148100.2	Wheat	nucleus	45.13	23.58
TraesCS5A01G149400.2	Wheat	mitochondrion	45.13	22.48
HORVU5Hr1G047100.5	Barley	nucleus	45.13	21.82
CDY11449	Canola	nucleus	23.1	19.34
CDX76663	Canola	cytosol	23.1	19.1
CDY00177	Canola	nucleus	23.47	18.47
CDY12250	Canola	nucleus	22.38	17.66
CDY48959	Canola	nucleus	22.02	16.71
CDY28511	Canola	nucleus	22.74	16.71
CDY34199	Canola	nucleus	22.38	16.62
CDY46403	Canola	nucleus	22.38	16.45
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	25.63	16.4
CDY30490	Canola	nucleus	25.63	16.36
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	25.27	16.28
CDY15737	Canola	cytosol	24.91	15.94
Os12t0109900-02	Rice	cytosol	22.38	13.42

Protein Annotations

MapMan:16.10.2.1.2	Gene3D:3.30.160.20	UniProt:A0A078G7S5	unigene:Bna.2335	EnsemblPlants:CDY20678	ProteinID:CDY20678
ProteinID:CDY20678.1	InterPro:DRB	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725
GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00012866001	InterPro:IPR014720	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR11207
PANTHER:PTHR11207:SF1	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0004EE0157	InterPro:dsRBD_dom	SEG:seg

Description

BnaC08g13800DBnaC08g13800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7S5]

Coordinates

chrLK032110:+:624737..626379

Molecular Weight (calculated)

30529.4 Da

IEP (calculated)

8.861

GRAVY (calculated)

-0.524

Length

277 amino acids

Sequence
(BLAST)

001: MTANEVPSGV SNCYVFKSRL QEYAQKYKLP TPIYETVKEG PSHKSLFQST VIVDGVRYDS LPGFFNRKAA EQSAAEVALQ ELSKSTELGQ CVSLPVHEMG
101: LCKNLLQEYA QKMNYAIPLY QCQKSETLGR APQFTCTVEI GGIKYTGAAT KTKREAEISA GRTALIAIQT ESKIDLANNH STQLTVLPCE KKTVEVASPV
201: KETFKTPKAR RAQFKRKAKK GKRKAAGTII PPEPTEHCQN DQQPENVEKV LNMEPSSCLN GFKEAAFTSV ETEASQA

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.