Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50691 | Canola | nucleus | 38.88 | 96.26 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 94.96 | 95.03 |
| AT3G03300.1 | Thale cress | nucleus | 80.27 | 80.33 |
| KRH11802 | Soybean | cytosol | 12.6 | 61.4 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 55.44 | 55.2 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 54.28 | 53.32 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 51.76 | 53.18 |
| Solyc06g048960.2.1 | Tomato | vacuole | 53.42 | 53.04 |
| KRH36816 | Soybean | cytosol | 53.92 | 52.71 |
| Solyc11g008520.1.1 | Tomato | nucleus | 53.35 | 51.89 |
| PGSC0003DMT400042918 | Potato | nucleus | 40.96 | 51.54 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 47.23 | 49.81 |
| Os03t0583900-01 | Rice | nucleus | 44.2 | 43.55 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 42.04 | 43.23 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 43.34 | 43.03 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 43.2 | 42.83 |
| OQU91441 | Sorghum | nucleus | 42.4 | 42.5 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 23.4 | 41.24 |
| HORVU5Hr1G019300.8 | Barley | plastid | 43.41 | 40.88 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 4.18 | 40.56 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 42.62 | 40.41 |
| Zm00001d013797_P006 | Maize | nucleus | 19.29 | 36.46 |
| KXG38096 | Sorghum | plastid | 19.65 | 35.09 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 6.55 | 32.04 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 6.48 | 31.69 |
| CDY48286 | Canola | cytosol | 6.26 | 30.74 |
| CDY22924 | Canola | cytosol | 6.12 | 30.04 |
| CDY35811 | Canola | nucleus | 32.25 | 27.3 |
| CDX92469 | Canola | nucleus, plastid | 32.04 | 27.1 |
| CDY15207 | Canola | nucleus | 30.74 | 23.6 |
| CDX90002 | Canola | nucleus | 30.6 | 23.45 |
| CDY21223 | Canola | nucleus | 25.85 | 23.45 |
| CDY30942 | Canola | nucleus | 21.24 | 23.39 |
| CDY54644 | Canola | cytosol | 5.33 | 22.09 |
| CDY29825 | Canola | plastid | 5.69 | 21.07 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:1.20.1320.30 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| MapMan:35.1 | GO:A0A078IL94 | UniProt:A0A078IL94 | EnsemblPlants:CDY50692 | ProteinID:CDY50692 | ProteinID:CDY50692.1 |
| InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0016891 | GO:GO:0031047 | GO:GO:0090501 | GO:GO:0090502 | EnsemblPlantsGene:GSBRNA2T00097268001 |
| InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 |
| InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | InterPro:P-loop_NTPase |
| InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 |
| PFAM:PF04851 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | InterPro:RNase_III_dom | InterPro:RNase_III_sf |
| SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 |
| SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0004EE3FFE | InterPro:dsRBD_dom | : |
Description
BnaC05g47910DBnaC05g47910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IL94]
Coordinates
chrLK032932:-:28655..35052
Molecular Weight (calculated)
156947.0 Da
IEP (calculated)
7.669
GRAVY (calculated)
-0.102
Length
1389 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTIVDMEIES ADQVSPLPFA RSYQVEALEK AMKRNTIVYL ETGSGKTLIA IMLLRSYAYL FRKPSPCFSV FLVPQVVLVT QQAEALKRHT DLKVGMYWGS
0101: MGVDFWDAPT WKQEVDTYEV LVMTPAILLS ALRHSFLTLN MIKVLIFDEC HHARGNHAYA CILKEFYHKE LKSATSVVPR IFGMTASPVK TKGENLDSYW
0201: KKIHELESLM NSKVYTCESE SVLARFVPFS TPSFKLYQHM EIPSSTRAGI IAELEKLAKE HLFALSTLDL KSSTVNSIKK RLSKICSSIT YCLDELGILM
0301: ALKAAQSFSV SQNDFVLWGQ LEKFSETSIK KFCSNASQAI LAYIPDGPYW SVANIERKLE PGLVTSKIVC LVESLLGYRS LEKIRCIIFV ERVIAAMVLE
0401: SFLNEILPTY NSWKTKYVAG NNSGLQSQTR KKQNETVEDF RKGLVNIIVS TSILEEGLDV QSCNLVVGFD PASNICSFIQ SQGRARMPNS DYLMMVESGD
0501: MVTQSRLKKY ISGAKRMRED SLSHSLVPCQ PLPDDSSGEV YRVDSTGAIV TFSSSVSLIY FYCSRLPSDE YFKPTPRFDI DKDQGICILY LPKSCQVKEV
0601: KFQGNGNVLK QAVCLKACIK LHRAGALTDH LVPDMVLKET VQQKLGKIHY DTEQPSYFPP ELVSQFSALS QTTYHLYSIR MKSEFPGNLH FKDILLGTRV
0701: KLEDDIGNTC FRLEDHLGTI AVTLSYVGAF DLAQDEILLC RRFQITLFRV LLDHSVENLV AALDGLHLRD GLALDYLLVP STHEQKASLI DWEVIRSVNF
0801: TSHKPWKRHV NCSAKDASCI LHTKNGLFCT CVLQNALVCT PHNGYVYCTR GILSNLNANS VLTKRNSGDV TYMEYYEKRH EIRLSIVDEP LLNGRHIFTM
0901: HNNLHMTMKK KEKEHDKEYV ELPPELCHVI LAPISVDMIY SYKFMPSVMH RIESLLIALN LKKNIPKVNI PTIKVLEAIT TKKCQDQFHL ESLETLGDSF
1001: LKYAVCQHLF QEYHTHHEGL LSSIKDGMIS NVTLCKFGCD QKIQGFIRNE CFEPKGWMVP GQSSAAYALV NDHLSESRSM YIARRRNLKR KSVADVVEAL
1101: IGAYLSEGGE LAALTFMNWV GIKVDFTTTM IQREPSIQAE KLVNVSYMES LLNYKFKDKS LLVEALTHGS YMIPEIPRCY QRLEFLGDSV LDYLITKHLY
1201: GEYPNLSPGL LTDMRSASVN NECYAQVAVK SNLHKHVLHA SHDLHKHISR TVSEFERLSS VQSSFGWESE IAFPKVLGDL IESLAGAIHV DSGYDKEVVF
1301: ACIKPLLGCM ITPETVKLHP VRELTELCQK AQFELTKAKG FENGEAYFTV EVEAKEMSFA HTAKASDKKM AKKLAYKEVL NSLKKGLDS
0101: MGVDFWDAPT WKQEVDTYEV LVMTPAILLS ALRHSFLTLN MIKVLIFDEC HHARGNHAYA CILKEFYHKE LKSATSVVPR IFGMTASPVK TKGENLDSYW
0201: KKIHELESLM NSKVYTCESE SVLARFVPFS TPSFKLYQHM EIPSSTRAGI IAELEKLAKE HLFALSTLDL KSSTVNSIKK RLSKICSSIT YCLDELGILM
0301: ALKAAQSFSV SQNDFVLWGQ LEKFSETSIK KFCSNASQAI LAYIPDGPYW SVANIERKLE PGLVTSKIVC LVESLLGYRS LEKIRCIIFV ERVIAAMVLE
0401: SFLNEILPTY NSWKTKYVAG NNSGLQSQTR KKQNETVEDF RKGLVNIIVS TSILEEGLDV QSCNLVVGFD PASNICSFIQ SQGRARMPNS DYLMMVESGD
0501: MVTQSRLKKY ISGAKRMRED SLSHSLVPCQ PLPDDSSGEV YRVDSTGAIV TFSSSVSLIY FYCSRLPSDE YFKPTPRFDI DKDQGICILY LPKSCQVKEV
0601: KFQGNGNVLK QAVCLKACIK LHRAGALTDH LVPDMVLKET VQQKLGKIHY DTEQPSYFPP ELVSQFSALS QTTYHLYSIR MKSEFPGNLH FKDILLGTRV
0701: KLEDDIGNTC FRLEDHLGTI AVTLSYVGAF DLAQDEILLC RRFQITLFRV LLDHSVENLV AALDGLHLRD GLALDYLLVP STHEQKASLI DWEVIRSVNF
0801: TSHKPWKRHV NCSAKDASCI LHTKNGLFCT CVLQNALVCT PHNGYVYCTR GILSNLNANS VLTKRNSGDV TYMEYYEKRH EIRLSIVDEP LLNGRHIFTM
0901: HNNLHMTMKK KEKEHDKEYV ELPPELCHVI LAPISVDMIY SYKFMPSVMH RIESLLIALN LKKNIPKVNI PTIKVLEAIT TKKCQDQFHL ESLETLGDSF
1001: LKYAVCQHLF QEYHTHHEGL LSSIKDGMIS NVTLCKFGCD QKIQGFIRNE CFEPKGWMVP GQSSAAYALV NDHLSESRSM YIARRRNLKR KSVADVVEAL
1101: IGAYLSEGGE LAALTFMNWV GIKVDFTTTM IQREPSIQAE KLVNVSYMES LLNYKFKDKS LLVEALTHGS YMIPEIPRCY QRLEFLGDSV LDYLITKHLY
1201: GEYPNLSPGL LTDMRSASVN NECYAQVAVK SNLHKHVLHA SHDLHKHISR TVSEFERLSS VQSSFGWESE IAFPKVLGDL IESLAGAIHV DSGYDKEVVF
1301: ACIKPLLGCM ITPETVKLHP VRELTELCQK AQFELTKAKG FENGEAYFTV EVEAKEMSFA HTAKASDKKM AKKLAYKEVL NSLKKGLDS
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.