Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 3
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g076420.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | Solyc04g076420.2.1 | AT1G09700.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g048960.2.1 | Tomato | vacuole | 88.76 | 85.78 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 82.25 | 84.43 |
| Solyc11g008520.1.1 | Tomato | nucleus | 85.13 | 80.6 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 59.32 | 57.49 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 55.1 | 52.69 |
| AT3G03300.1 | Thale cress | nucleus | 53.7 | 52.31 |
| KRH36816 | Soybean | cytosol | 54.44 | 51.79 |
| CDY50692 | Canola | nucleus | 53.18 | 51.76 |
| Bra031999.1-P | Field mustard | nucleus | 48.89 | 51.76 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 53.03 | 51.66 |
| KRH11802 | Soybean | cytosol | 10.5 | 49.82 |
| Os03t0583900-01 | Rice | nucleus | 46.08 | 44.18 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 45.27 | 43.68 |
| OQU91441 | Sorghum | nucleus | 44.75 | 43.65 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 45.12 | 43.6 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 43.57 | 43.6 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 25.37 | 43.53 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 44.53 | 41.09 |
| HORVU5Hr1G019300.8 | Barley | plastid | 44.82 | 41.08 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 4.07 | 38.46 |
| Solyc10g006210.1.1 | Tomato | cytosol | 3.03 | 37.96 |
| Zm00001d013797_P006 | Maize | nucleus | 20.64 | 37.96 |
| KXG38096 | Sorghum | plastid | 21.08 | 36.63 |
| Solyc08g067200.1.1 | Tomato | cytosol | 6.88 | 31.96 |
| Solyc05g041920.2.1 | Tomato | cytosol | 5.55 | 28.2 |
| Solyc07g005030.2.1 | Tomato | cytosol | 31.8 | 27.99 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 5.99 | 27.65 |
| Solyc05g024210.1.1 | Tomato | cytosol | 6.58 | 26.49 |
| Solyc07g049150.2.1 | Tomato | cytosol | 5.18 | 26.12 |
| Solyc08g067210.2.1 | Tomato | nucleus | 25.74 | 24.34 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 6.58 | 22.76 |
| Solyc10g005130.2.1 | Tomato | nucleus | 30.7 | 21.98 |
Protein Annotations
Description
No Description!
Coordinates
chr11:+:2715282..2724508
Molecular Weight (calculated)
152485.0 Da
IEP (calculated)
6.736
GRAVY (calculated)
-0.131
Length
1352 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLLRSYAYLL RKPSPYIAVF LVPTVVLVTQ QGDALMLHTD LKVGKYWGEM GVDYWDASTW QQQVDDHEVL VMTPAILLAA LRHSFLQIDM IKVIIFDECH
0101: NARGKHPYAS IMVEFYHHQL THESAQLPRI FGMTASPIKS KGASTAHSYW QKIHDLENLM NSKVYTCSSE SVLAEYIPFS NPKLKIYEHE DIPCSLFNTL
0201: AHDLERLKEK HECSISKSNL SAMSAGSARR RLSKLHMAFL FCLSEMGVWL AFKAAEFLSF EENDFFSWGE FDACAQTIVR DFSLGASKIF SARLPSGPHW
0301: SIGGDIQANA DAGYLSSKVN CLLESLLEYR DQKDLRCIIF VERIVTAIVL RSLLNELLPE RSGWRTEYTA GHVSVLQSQS RKSQNKIVEE FRKGLVNIIV
0401: ATSILEEGLD VQSCNLVIRF DPSATVCSFI QSRGRARMQN SDFLLMVRDG DDPTLTRMQN YMASGEIMRQ ESLRHASIPC SPLDDELYDE PCYKVESTGA
0501: VVTLSSSVSL LYFYCSRLPS DGYFKPNPRC VIDKETETCT LQLPKSSPLQ GIISVQGKRK ILKQLACLEA CKQLHRVGAL TDNLVPDIVE EEIINKELEC
0601: QIQTVEESKY FPPELVSHCS NDSEAVYYCY LVEMQHASYN DFELHGIILA VRTRLKCDDE ILAFDLDVDR RGLLQVQLNY SKVVTLTAEE IRRCQRFQVS
0701: VFRILLDRDL SILQDALGAV QSPIGSAVSD YLLLPSLGST PEINWKCVNS LLFPSQALGD KHMDWCSTQD RKRSVNTKNG LVCSCMLENS LVFTPHNGYI
0801: YCVTGFLDKL DCNSLLGMRT GESITYIEYY KKRHGINICF EEEPLLRGKH ICKVHNYLQR SRTQKAKDST DSSVELPPEI CSLIMSPLSI STLNTYSYVP
0901: SIMHRIESLV MASNLKRMHL DHCTLNVPIP TATILEAMTT KKCLEKFHLE SLETLGDSFL KYAASIKLFK TYENHHEGLL TVKKTQIISN AALCKLGCAR
1001: KIPGFIRNEP FDLKAWIIPG DNSQVHSFDE VLLTSSDKMY SRVKQKIRSK RVADVVEALI GAYLSSGGEV AALSFMKWLG VDINFVDAPM SRHFPMNAEK
1101: LVNVRYLESL LHYKFNDPSL LVEALTHGSY MIPEIPRCYQ RLEFLGDAVL DYVVTAHLYF KYPGLTPGLI TDLRSASVNN ECYAQSAVKA GLHKHILHAS
1201: QDLQRQICST VEDFDKLNLD STFGWEAETT FPKVLGDVIE SLGGAIFVDS GFDKETTFQC IRPLLEPLVT PQTLKPHPVR ELSELCDQKG YIRKKDVVSR
1301: ENGIAYITVE VEANGVVHKS TCSGRDKLIA KKVASKNVLK SLKECPSNAT EQ
0101: NARGKHPYAS IMVEFYHHQL THESAQLPRI FGMTASPIKS KGASTAHSYW QKIHDLENLM NSKVYTCSSE SVLAEYIPFS NPKLKIYEHE DIPCSLFNTL
0201: AHDLERLKEK HECSISKSNL SAMSAGSARR RLSKLHMAFL FCLSEMGVWL AFKAAEFLSF EENDFFSWGE FDACAQTIVR DFSLGASKIF SARLPSGPHW
0301: SIGGDIQANA DAGYLSSKVN CLLESLLEYR DQKDLRCIIF VERIVTAIVL RSLLNELLPE RSGWRTEYTA GHVSVLQSQS RKSQNKIVEE FRKGLVNIIV
0401: ATSILEEGLD VQSCNLVIRF DPSATVCSFI QSRGRARMQN SDFLLMVRDG DDPTLTRMQN YMASGEIMRQ ESLRHASIPC SPLDDELYDE PCYKVESTGA
0501: VVTLSSSVSL LYFYCSRLPS DGYFKPNPRC VIDKETETCT LQLPKSSPLQ GIISVQGKRK ILKQLACLEA CKQLHRVGAL TDNLVPDIVE EEIINKELEC
0601: QIQTVEESKY FPPELVSHCS NDSEAVYYCY LVEMQHASYN DFELHGIILA VRTRLKCDDE ILAFDLDVDR RGLLQVQLNY SKVVTLTAEE IRRCQRFQVS
0701: VFRILLDRDL SILQDALGAV QSPIGSAVSD YLLLPSLGST PEINWKCVNS LLFPSQALGD KHMDWCSTQD RKRSVNTKNG LVCSCMLENS LVFTPHNGYI
0801: YCVTGFLDKL DCNSLLGMRT GESITYIEYY KKRHGINICF EEEPLLRGKH ICKVHNYLQR SRTQKAKDST DSSVELPPEI CSLIMSPLSI STLNTYSYVP
0901: SIMHRIESLV MASNLKRMHL DHCTLNVPIP TATILEAMTT KKCLEKFHLE SLETLGDSFL KYAASIKLFK TYENHHEGLL TVKKTQIISN AALCKLGCAR
1001: KIPGFIRNEP FDLKAWIIPG DNSQVHSFDE VLLTSSDKMY SRVKQKIRSK RVADVVEALI GAYLSSGGEV AALSFMKWLG VDINFVDAPM SRHFPMNAEK
1101: LVNVRYLESL LHYKFNDPSL LVEALTHGSY MIPEIPRCYQ RLEFLGDAVL DYVVTAHLYF KYPGLTPGLI TDLRSASVNN ECYAQSAVKA GLHKHILHAS
1201: QDLQRQICST VEDFDKLNLD STFGWEAETT FPKVLGDVIE SLGGAIFVDS GFDKETTFQC IRPLLEPLVT PQTLKPHPVR ELSELCDQKG YIRKKDVVSR
1301: ENGIAYITVE VEANGVVHKS TCSGRDKLIA KKVASKNVLK SLKECPSNAT EQ
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.