Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005065_P002 | |
| Zm00001d006103_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | Zm00001d005065_P002 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | Zm00001d006103_P001 | AT5G41070.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38096 | Sorghum | plastid | 85.58 | 80.85 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 9.8 | 50.35 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 35.78 | 33.38 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 58.23 | 31.68 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 58.5 | 30.74 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 57.69 | 30.26 |
| Os03t0583900-01 | Rice | nucleus | 57.01 | 29.72 |
| HORVU5Hr1G019300.8 | Barley | plastid | 58.1 | 28.95 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 57.14 | 28.67 |
| PGSC0003DMT400042918 | Potato | nucleus | 38.5 | 25.63 |
| Zm00001d032362_P002 | Maize | mitochondrion | 11.43 | 25.53 |
| Bra031999.1-P | Field mustard | nucleus | 36.46 | 20.99 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 39.59 | 20.86 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 37.96 | 20.64 |
| Solyc06g048960.2.1 | Tomato | vacuole | 38.1 | 20.01 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 35.65 | 19.89 |
| Zm00001d009879_P002 | Maize | plastid | 9.93 | 19.41 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 36.46 | 19.31 |
| CDY50692 | Canola | nucleus | 36.46 | 19.29 |
| KRH36816 | Soybean | cytosol | 37.14 | 19.21 |
| AT3G03300.1 | Thale cress | nucleus | 36.19 | 19.16 |
| Solyc11g008520.1.1 | Tomato | nucleus | 37.14 | 19.12 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 36.46 | 18.95 |
| KRH11802 | Soybean | cytosol | 6.12 | 15.79 |
| Zm00001d032655_P006 | Maize | nucleus | 27.35 | 12.8 |
| Zm00001d025830_P011 | Maize | cytosol, nucleus, plasma membrane | 27.48 | 12.55 |
| Zm00001d042432_P007 | Maize | cytosol | 26.94 | 11.87 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 26.53 | 10.1 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:103626078 | Gene3D:3.30.160.20 | MapMan:35.1 | UniProt:A0A1D6GMB4 | ProteinID:AQK64422.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016075 | GO:GO:0016787 | GO:GO:0090501 | GO:GO:0090502 | InterPro:IPR000999 |
| InterPro:IPR014720 | InterPro:IPR036389 | HAMAP:MF_00104 | PFAM:PF00035 | PFAM:PF00636 | ScanProsite:PS00517 |
| PFscan:PS50137 | PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | InterPro:RNase_III | InterPro:RNase_III_dom |
| InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00535 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0008453571 |
| EnsemblPlantsGene:Zm00001d013797 | EnsemblPlants:Zm00001d013797_P006 | EnsemblPlants:Zm00001d013797_T006 | InterPro:dsRBD_dom | SEG:seg | : |
Description
Endoribonuclease Dicer homolog 2
Coordinates
chr5:-:20398219..20418365
Molecular Weight (calculated)
82137.6 Da
IEP (calculated)
8.182
GRAVY (calculated)
-0.215
Length
735 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGPASPSAA AETDTRGGEA PSKAKRGNAE EKYQHGQPVY FPEELMDNWV SFSLRGLYYC YNISLQGSCN TTADPTDIIL AVKCDMGPDF FRYSFNLGGT
101: DITIKYLYKI HLNQEQVLFA RRFQITVLSL LINSNSSEVS NAIKYFREWQ VDLGVVYLLL PTASGKIDWC GIKFSTSSAY DVTDKNMRHC HSCKDADILQ
201: TMDDPCCRCI LQNSVVYAPR ERKFYIITGL DLNANQPLDL NNRSAVSCKS KPLLVASGLF TVQNFLYKCY GKRKEPTSVK LPPELCKIVM APVSANTLFS
301: FSFVPSIMYR IQCLLLSAKL KIQLGPRMQQ FNITAMKILE ALTTKECQEK FSMESLETLG DSFIKYVTGQ NLFNKYKHRE DMLTSMREEK GYIRGELFNP
401: QKWTIPGFGY DSRGNNKVFF RATNNMYSLK KISIKSKRIA DTVEALTGAY LSTCGELAAV HFIKALGMDV ELHSKMQVER TITTKSEELI DAESLQTMLK
501: YVFYDTSLLV EALTHSSYNI TGITACNERL EFLGDAVLDY ILTYYFYRKY PNCTPALLTN LRKASVNNCC YAHAAVKAGL HKHILHSSSK QMVNDLENSG
601: RSFSGPSHGW EAGISLPEDL ADLFEAIAGA IYVDSGNDKE VVWSAIRRLL EPLATPGTME PDPVSELKEL CEHKHYPKPS YSPTRDSVAG VTRVVAQVTA
701: ARTVYSGTGT GRNQDVAEVL AAKALLKKIK AAARG
101: DITIKYLYKI HLNQEQVLFA RRFQITVLSL LINSNSSEVS NAIKYFREWQ VDLGVVYLLL PTASGKIDWC GIKFSTSSAY DVTDKNMRHC HSCKDADILQ
201: TMDDPCCRCI LQNSVVYAPR ERKFYIITGL DLNANQPLDL NNRSAVSCKS KPLLVASGLF TVQNFLYKCY GKRKEPTSVK LPPELCKIVM APVSANTLFS
301: FSFVPSIMYR IQCLLLSAKL KIQLGPRMQQ FNITAMKILE ALTTKECQEK FSMESLETLG DSFIKYVTGQ NLFNKYKHRE DMLTSMREEK GYIRGELFNP
401: QKWTIPGFGY DSRGNNKVFF RATNNMYSLK KISIKSKRIA DTVEALTGAY LSTCGELAAV HFIKALGMDV ELHSKMQVER TITTKSEELI DAESLQTMLK
501: YVFYDTSLLV EALTHSSYNI TGITACNERL EFLGDAVLDY ILTYYFYRKY PNCTPALLTN LRKASVNNCC YAHAAVKAGL HKHILHSSSK QMVNDLENSG
601: RSFSGPSHGW EAGISLPEDL ADLFEAIAGA IYVDSGNDKE VVWSAIRRLL EPLATPGTME PDPVSELKEL CEHKHYPKPS YSPTRDSVAG VTRVVAQVTA
701: ARTVYSGTGT GRNQDVAEVL AAKALLKKIK AAARG
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VVLSMSMDLY VARAMITKAS LAFKGSLDIT ENQLSSLKKF HVRLMSIVLD VDVEPSTTPW DPAKAYLFVP VTDNTSMEPI
1101: KGINWELVEK ITKTTAWDNP LQRARPDVYL GTNERTLGGD RREYGFGKLR HNIVFGQKSH PTYGIRGAVA SFDVVRASGL LPVRDAFEKE VEEDLSKGKL
1201: MMADGCMVAE DLIGKIVTAA HSGKRFYVDS ICYDMSAETS FPRKEGYLGP LEYNTYADYY KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET
1301: VLDKTYYVFL PPELCVVHPL SGSLIRGAQR LPSIMRRVES MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL LGDAYLKWVV SRFLFLKYPQ
1401: KHEGQLTRMR QQMVSNMVLY QFALVKGLQS YIQADRFAPS RWSAPGVPPV FDEDTKDGGS SFFDEEQKPV SEENSDVFED GEMEDGELEG DLSSYRVLSS
1501: KTLADVVEAL IGVYYVEGGK IAANHLMKWI GIHVEDDPDE VDGTLKNVNV PESVLKSIDF VGLERALKYE FKEKGLLVEA ITHASRPSSG VSCYQRLEFV
1601: GDAVLDHLIT RHLFFTYTSL PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK QIREFVKEVQ TESSKPGFNS FGLGDCKAPK VLGDIVESIA
1701: GAIFLDSGKD TTAAWKVFQP LLQPMVTPET LPMHPVRELQ ERCQQQAEGL EYKASRSGNT ATVEVFIDGV QVGVAQNPQK KMAQKLAARN ALAALKEKEI
1801: AESKEKHINN GNAGEDQGEN ENGNKKNGHQ PFTRQTLNDI CLRKNWPMPS YRCVKEGGPA HAKRFTFGVR VNTSDRGWTD ECIGEPMPSV KKAKDSAAVL
1901: LLELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VVLSMSMDLY VARAMITKAS LAFKGSLDIT ENQLSSLKKF HVRLMSIVLD VDVEPSTTPW DPAKAYLFVP VTDNTSMEPI
1101: KGINWELVEK ITKTTAWDNP LQRARPDVYL GTNERTLGGD RREYGFGKLR HNIVFGQKSH PTYGIRGAVA SFDVVRASGL LPVRDAFEKE VEEDLSKGKL
1201: MMADGCMVAE DLIGKIVTAA HSGKRFYVDS ICYDMSAETS FPRKEGYLGP LEYNTYADYY KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET
1301: VLDKTYYVFL PPELCVVHPL SGSLIRGAQR LPSIMRRVES MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL LGDAYLKWVV SRFLFLKYPQ
1401: KHEGQLTRMR QQMVSNMVLY QFALVKGLQS YIQADRFAPS RWSAPGVPPV FDEDTKDGGS SFFDEEQKPV SEENSDVFED GEMEDGELEG DLSSYRVLSS
1501: KTLADVVEAL IGVYYVEGGK IAANHLMKWI GIHVEDDPDE VDGTLKNVNV PESVLKSIDF VGLERALKYE FKEKGLLVEA ITHASRPSSG VSCYQRLEFV
1601: GDAVLDHLIT RHLFFTYTSL PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK QIREFVKEVQ TESSKPGFNS FGLGDCKAPK VLGDIVESIA
1701: GAIFLDSGKD TTAAWKVFQP LLQPMVTPET LPMHPVRELQ ERCQQQAEGL EYKASRSGNT ATVEVFIDGV QVGVAQNPQK KMAQKLAARN ALAALKEKEI
1801: AESKEKHINN GNAGEDQGEN ENGNKKNGHQ PFTRQTLNDI CLRKNWPMPS YRCVKEGGPA HAKRFTFGVR VNTSDRGWTD ECIGEPMPSV KKAKDSAAVL
1901: LLELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.