Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031999.1-P | Field mustard | nucleus | 91.86 | 99.84 |
| CDY50692 | Canola | nucleus | 95.03 | 94.96 |
| CDY50691 | Canola | nucleus | 37.97 | 93.94 |
| AT3G03300.1 | Thale cress | nucleus | 81.27 | 81.27 |
| KRH11802 | Soybean | cytosol | 12.82 | 62.46 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 55.98 | 55.7 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 54.11 | 53.11 |
| Solyc06g048960.2.1 | Tomato | vacuole | 53.53 | 53.11 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 51.66 | 53.03 |
| KRH36816 | Soybean | cytosol | 54.25 | 52.99 |
| PGSC0003DMT400042918 | Potato | nucleus | 41.28 | 51.9 |
| Solyc11g008520.1.1 | Tomato | nucleus | 53.24 | 51.75 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 47.26 | 49.81 |
| Os03t0583900-01 | Rice | nucleus | 44.31 | 43.62 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 42.22 | 43.38 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 43.52 | 43.17 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 43.37 | 42.97 |
| OQU91441 | Sorghum | nucleus | 42.8 | 42.86 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 23.63 | 41.62 |
| HORVU5Hr1G019300.8 | Barley | plastid | 43.59 | 41.02 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 43.08 | 40.82 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 4.11 | 39.86 |
| Zm00001d013797_P006 | Maize | nucleus | 19.31 | 36.46 |
| KXG38096 | Sorghum | plastid | 19.45 | 34.7 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 6.63 | 32.39 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 6.56 | 32.04 |
| CDY48286 | Canola | cytosol | 6.2 | 30.39 |
| CDY22924 | Canola | cytosol | 6.05 | 29.68 |
| CDY35811 | Canola | nucleus | 31.92 | 27.0 |
| CDX92469 | Canola | nucleus, plastid | 31.7 | 26.8 |
| CDY15207 | Canola | nucleus | 30.98 | 23.77 |
| CDX90002 | Canola | nucleus | 30.84 | 23.62 |
| CDY21223 | Canola | nucleus | 25.86 | 23.45 |
| CDY30942 | Canola | nucleus | 21.18 | 23.31 |
| CDY54644 | Canola | cytosol | 5.19 | 21.49 |
| CDY29825 | Canola | plastid | 5.55 | 20.53 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 |
| GO:A0A078HZ18 | UniProt:A0A078HZ18 | EnsemblPlants:CDY43132 | ProteinID:CDY43132 | ProteinID:CDY43132.1 | InterPro:Dicer_dimer_sf |
| InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0016891 | GO:GO:0031047 | GO:GO:0090501 | GO:GO:0090502 | EnsemblPlantsGene:GSBRNA2T00076103001 | InterPro:Helicase/UvrB_N |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 |
| InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | InterPro:P-loop_NTPase | InterPro:PAZ_dom |
| InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | PFAM:PF04851 |
| ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 |
| SUPFAM:SSF69065 | UniParc:UPI0004EEEA9C | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
BnaA05g32540DBnaA05g32540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ18]
Coordinates
chrLK032546:+:47415..53884
Molecular Weight (calculated)
156704.0 Da
IEP (calculated)
7.182
GRAVY (calculated)
-0.109
Length
1388 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTIVDMEIES ADQVSPLPFA RSYQVEALEK AMKRNTIVYL ETGSGKTLIA IMLLRSYAYL FRKPSPCFSV FLVPQVVLVT QQAEALKRHT DLKVGMYWGS
0101: MGVDFWDAPT WKQEVDKYEV LVMTPAILLS ALRHSFLSLN MIKVLIFDEC HHARGNHAYA CILKEFYHKE LKSATSLVPR IFGMTASPVK TKGENLDSYW
0201: KKIHELESLM NSKVYTCANE SVLAQFVPFS TPSFKYYTYV EIPSSARAGI IAELEKLAKE HLLALATLDL KSSTVNSIKK RLSKICSSIT YCLDELGILM
0301: ALKAAQSFSV SQNDFVLWGQ LGEFSETSIK NFCRDASQAI LAYIPDGPYW SVANIERNLE AGLVTSKIVC LVESLLGYSS LEKIRCIIFV ERVIAAMVLE
0401: SFLNEILPTY NSWKTKYVAG NNSGLQSQTR KKQNETVEDF RKGLVNIIVS TSILEEGLDV QSCNLVVGFD PASNICSFIQ SQGRARMPNS DYLMMVERGD
0501: MDTQSRLKKY ISGAKRMRED SLSHSLVPCK PLPDDSSGEV YRVNSTGAIV TLSSSVSLIY FYCSRLPSDE YFKPTPRFDI DKDQGICTLY LPKSCQVKEV
0601: SAQGNGNLLK QTACLKACIQ LHQAGALTDH LVPDMVLKET VQLKLGKIHY DTEQPSYFPP ELVSQFSALS QTTYHFYSIR MKSEFPGNLH FKDVLLGTRV
0701: KLEDDIGNTC FRLEDHLGTI AVTLSYVGGF DLTQDEVLLC RRFQITLFRV LLDHSVENLL AALDGLHLRD GPALDYLLVP STHEQKASLI DWEVIRSVNF
0801: TSHKPWERHV DCSAKDASCI LHTKDGLFCT CVLQNALVYT PHNGYVYCTR GILSNLNANS VLTMRNSGDV TYMEYYEKRH EVQLNFVDEP LLNGRHIFTL
0901: HNNLHMTRKK EKEHDREYVE LPPELCHVIL APISVDMIYS YKFMPSVMQR VESLLIALNL KKNIPKVNIP TIKVLEAITT KKCQDQFHLE SLETLGDSFL
1001: KYAVCQHLFQ EYHTHHEGLL SSIKDGMISN VTLCKFGCDK KLQGFIRNEC FEPKGWMVPG QSSAAYALVN DYLSESRNMY IARRMNLKRK SVADVVEALI
1101: GAYLSEGGEL AALTFMNWVG IKVDFTTTMI QREPSIQAEK LVNVRYMESL LNYKFKDKSL LVEALTHGSY MIPEIPRCYQ RLEFLGDSVL DYLITKHLYG
1201: EYPNLSPGLL TDMRSASVNN ECYAQVAVKS NLHKHVLHAS HDLHKHISRT VSEFERLSSV QSSFGWESEI AFPKVLGDVI ESLAGAIHVD SGYNKEVVFA
1301: SIKPLLGCMI TPETVKLHPV RELTELCQKA QFELSKAKGF ENGEAFFTVE VEAKEMSFAH TARASDKKMA KKLAYKEVLN SLKKSLDS
0101: MGVDFWDAPT WKQEVDKYEV LVMTPAILLS ALRHSFLSLN MIKVLIFDEC HHARGNHAYA CILKEFYHKE LKSATSLVPR IFGMTASPVK TKGENLDSYW
0201: KKIHELESLM NSKVYTCANE SVLAQFVPFS TPSFKYYTYV EIPSSARAGI IAELEKLAKE HLLALATLDL KSSTVNSIKK RLSKICSSIT YCLDELGILM
0301: ALKAAQSFSV SQNDFVLWGQ LGEFSETSIK NFCRDASQAI LAYIPDGPYW SVANIERNLE AGLVTSKIVC LVESLLGYSS LEKIRCIIFV ERVIAAMVLE
0401: SFLNEILPTY NSWKTKYVAG NNSGLQSQTR KKQNETVEDF RKGLVNIIVS TSILEEGLDV QSCNLVVGFD PASNICSFIQ SQGRARMPNS DYLMMVERGD
0501: MDTQSRLKKY ISGAKRMRED SLSHSLVPCK PLPDDSSGEV YRVNSTGAIV TLSSSVSLIY FYCSRLPSDE YFKPTPRFDI DKDQGICTLY LPKSCQVKEV
0601: SAQGNGNLLK QTACLKACIQ LHQAGALTDH LVPDMVLKET VQLKLGKIHY DTEQPSYFPP ELVSQFSALS QTTYHFYSIR MKSEFPGNLH FKDVLLGTRV
0701: KLEDDIGNTC FRLEDHLGTI AVTLSYVGGF DLTQDEVLLC RRFQITLFRV LLDHSVENLL AALDGLHLRD GPALDYLLVP STHEQKASLI DWEVIRSVNF
0801: TSHKPWERHV DCSAKDASCI LHTKDGLFCT CVLQNALVYT PHNGYVYCTR GILSNLNANS VLTMRNSGDV TYMEYYEKRH EVQLNFVDEP LLNGRHIFTL
0901: HNNLHMTRKK EKEHDREYVE LPPELCHVIL APISVDMIYS YKFMPSVMQR VESLLIALNL KKNIPKVNIP TIKVLEAITT KKCQDQFHLE SLETLGDSFL
1001: KYAVCQHLFQ EYHTHHEGLL SSIKDGMISN VTLCKFGCDK KLQGFIRNEC FEPKGWMVPG QSSAAYALVN DYLSESRNMY IARRMNLKRK SVADVVEALI
1101: GAYLSEGGEL AALTFMNWVG IKVDFTTTMI QREPSIQAEK LVNVRYMESL LNYKFKDKSL LVEALTHGSY MIPEIPRCYQ RLEFLGDSVL DYLITKHLYG
1201: EYPNLSPGLL TDMRSASVNN ECYAQVAVKS NLHKHVLHAS HDLHKHISRT VSEFERLSSV QSSFGWESEI AFPKVLGDVI ESLAGAIHVD SGYNKEVVFA
1301: SIKPLLGCMI TPETVKLHPV RELTELCQKA QFELSKAKGF ENGEAFFTVE VEAKEMSFAH TARASDKKMA KKLAYKEVLN SLKKSLDS
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.