CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52961
KRH62246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03300.1	KRH52961	AT1G09700.1	15821876
AT3G03300.1	KRH62246	AT1G09700.1	15821876

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0315050-00	Rice	cytosol, extracellular, nucleus	15.79	31.47
KRH36818	Soybean	cytosol, nucleus, plastid	89.82	18.1
KRH36816	Soybean	cytosol	88.07	17.66
Bra031999.1-P	Field mustard	nucleus	62.46	13.94
VIT_04s0023g00920.t01	Wine grape	cytosol, nucleus, plastid	67.37	13.76
CDY43132	Canola	cytosol, nucleus, plastid	62.46	12.82
CDY50692	Canola	nucleus	61.4	12.6
AT3G03300.1	Thale cress	nucleus	60.7	12.46
Solyc11g008520.1.1	Tomato	nucleus	61.05	12.18
Solyc06g048960.2.1	Tomato	vacuole	57.54	11.72
Solyc11g008540.1.1	Tomato	mitochondrion	49.82	10.5
Solyc11g008530.1.1	Tomato	mitochondrion	47.02	10.17
KRH14361	Soybean	cytosol	12.28	10.14
Os03t0583900-01	Rice	nucleus	49.47	10.0
TraesCS5D01G086900.1	Wheat	cytosol	48.42	9.85
TraesCS5A01G073600.1	Wheat	cytosol, nucleus, plastid	48.07	9.79
TraesCS5B01G079900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	45.96	9.7
OQU91441	Sorghum	nucleus	46.67	9.6
HORVU5Hr1G019300.8	Barley	plastid	48.77	9.42
Zm00001d013796_P005	Maize	cytosol, endoplasmic reticulum, nucleus	46.67	9.08
KRH52276	Soybean	cytosol	15.79	8.95
KRG97157	Soybean	cytosol, nucleus, plasma membrane	20.35	7.36
KXG38096	Sorghum	plastid	17.89	6.56
KRH03544	Soybean	nucleus	36.84	6.42
KRH20103	Soybean	nucleus	36.84	6.41
KRH61605	Soybean	nucleus	36.84	6.27
KRG97266	Soybean	cytosol, nucleus, plastid	42.46	6.22
KRH68982	Soybean	cytosol, nucleus, plastid	42.11	6.16
Zm00001d013797_P006	Maize	nucleus	15.79	6.12
PGSC0003DMT400042918	Potato	nucleus	21.75	5.62

Protein Annotations

EntrezGene:100816164	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02009241	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_15G131500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422	GO:GO:0040029	GO:GO:0090501
GO:GO:0090502	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR014720	UniProt:K7MB46	EnsemblPlants:KRH11802
ProteinID:KRH11802	ProteinID:KRH11802.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192	PANTHER:PTHR14950
PANTHER:PTHR14950:SF19	SMART:SM00358	SMART:SM00487	SUPFAM:SSF52540	SUPFAM:SSF54768	UniParc:UPI000233BA12
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:10565844..10569314

Molecular Weight (calculated)

32422.5 Da

IEP (calculated)

6.003

GRAVY (calculated)

-0.092

Length

285 amino acids

Sequence
(BLAST)

001: MEEVLSLEVD SNTQQQKITA DVLPFAGSYQ LEALDNAIRE NTIVYLETGS GKTLIAVMLL RSYAHHLRKP SPQISVFLVP QVVLVSQQAE AVKKHTDLKV
101: GMFWGDMGVD FWDATTWKQE VEKHEVFVMT PAILLNCLRH SFLKLNLIKV LIMDECHHAR GKHPYACIMT VLGDIIESLA GAILVDSRFN KEVVWQSIRP
201: LLEPLVTPET LKLHPIRELN ELCQKRSYKI VLEDVSRKDG VTNYRMELEA DGVIHEYEYT GPALRDTAKK IACKEILNSL KEEEL

Best Arabidopsis Sequence Match ( AT3G03300.1 )
(BLAST)

0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY

Arabidopsis Description

DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.