CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH06239
KRH14361
KRH47662
KRH52586
KRH54542
KRH56919
KRH61926
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	KRH06239	AT1G54060.1	21798944
AT3G20420.1	KRH47662	AT1G54060.1	21798944
AT3G20420.1	KRH52586	AT1G71230.1	21798944
AT3G20420.1	KRH61926	AT1G71230.1	21798944
AT3G20420.1	KRH14361	AT3G20420.1	21798944
AT3G20420.1	KRH03466	AT3G47620.1	21798944
AT3G20420.1	KRH54542	AT3G47620.1	21798944
AT3G20420.1	KRH56919	AT3G47620.1	21798944
AT3G20420.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g00940.t01	Wine grape	cytosol	60.58	62.02
PGSC0003DMT400033487	Potato	cytosol	56.81	53.41
Bra035784.1-P	Field mustard	cytosol	51.59	53.13
CDY54644	Canola	cytosol	51.59	53.13
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	56.52	49.87
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	48.41	48.97
CDY29825	Canola	plastid	52.17	48.0
GSMUA_Achr2P15170_001	Banana	cytosol	45.22	45.88
AT3G20420.1	Thale cress	plastid	51.59	45.52
Os05t0271300-00	Rice	cytosol, nucleus, plastid	40.58	44.16
Zm00001d009879_P002	Maize	plastid	47.83	43.88
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	46.09	42.74
TraesCS7D01G504300.3	Wheat	mitochondrion	45.51	42.43
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	45.22	42.39
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	45.51	42.32
TraesCS7A01G513500.1	Wheat	nucleus	38.55	41.96
TraesCS7B01G428200.1	Wheat	mitochondrion	44.35	41.92
TraesCS7A01G512700.1	Wheat	mitochondrion	44.06	41.87
TraesCS7B01G430900.2	Wheat	mitochondrion	45.22	41.71
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	48.7	41.28
TraesCSU01G086900.1	Wheat	mitochondrion	43.77	40.7
HORVU7Hr1G115000.1	Barley	nucleus	21.45	39.36
HORVU7Hr1G115100.2	Barley	plastid	44.93	37.99
KXG21693	Sorghum	plastid	47.25	36.88
Os01t0551100-01	Rice	cytosol	24.35	32.81
KRH52276	Soybean	cytosol	28.99	19.88
AT5G45150.1	Thale cress	cytosol	35.94	12.96
KRH11802	Soybean	cytosol	10.14	12.28
KRG97157	Soybean	cytosol, nucleus, plasma membrane	20.58	9.01
KRH61605	Soybean	nucleus	31.59	6.51
KRH20103	Soybean	nucleus	30.43	6.41
KRH03544	Soybean	nucleus	29.86	6.3
KRH68982	Soybean	cytosol, nucleus, plastid	33.91	6.01
KRG97266	Soybean	cytosol, nucleus, plastid	33.62	5.96
KRH36818	Soybean	cytosol, nucleus, plastid	23.48	5.73
KRH36816	Soybean	cytosol	23.19	5.63

Protein Annotations

Gene3D:1.10.1520.10	EntrezGene:100802288	MapMan:12.5.1.12	Gene3D:3.30.160.20	UniProt:A0A0R0GH56	EMBL:ACUP02008500
EnsemblPlantsGene:GLYMA_14G021600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016075	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422	GO:GO:0040029
GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	EnsemblPlants:KRH14361
ProteinID:KRH14361	ProteinID:KRH14361.1	HAMAP:MF_00104	PFAM:PF00035	PFAM:PF00636	PFscan:PS50137
PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III	InterPro:RNase_III_dom	InterPro:RNase_III_sf
SMART:SM00358	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI000233AFC5	InterPro:dsRBD_dom

Description

hypothetical protein

Coordinates

chr14:-:1528497..1530268

Molecular Weight (calculated)

38153.1 Da

IEP (calculated)

6.887

GRAVY (calculated)

-0.116

Length

345 amino acids

Sequence
(BLAST)

001: MEVSLLEEVE NILRYRFRNK KLLEEALTHS SFLDGVSYER LEFVGDPVLS LAISNYLFLA YPDLDPGQLS ALRAANVSTE KLARVAVRIG LHRFVRHSAP
101: PLVDKVERFV DAVKLEINPV AHGGSVKAPK VLADVVESVA AAIYVDVNFD LQTLWVIMRG VLEPIVTPDA LEKQPQPVTM LYEMCQKKGK QVDIKPSREG
201: DLSVAKVFVD GEFVASASSS QKDHAKLEAA KIALGKLAHL VPSTDKKSAT NMKLNFAADE NGTWVVEAPK NKLRELCAVK KWPIPEYIIE KDSGPSHEKK
301: FVCAVQIPTA DGILQMSGDE KSRVKDAENS AASLMIRALQ QYNYL

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.