Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G115000.1 | Barley | nucleus | 45.1 | 97.87 |
| TraesCS7D01G502800.1 | Wheat | mitochondrion, nucleus | 81.86 | 90.76 |
| TraesCS7D01G398600.2 | Wheat | mitochondrion, nucleus | 82.11 | 90.05 |
| TraesCS7B01G430900.2 | Wheat | mitochondrion | 82.35 | 89.84 |
| TraesCS7A01G513400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 81.62 | 89.76 |
| TraesCS7A01G513500.1 | Wheat | nucleus | 69.61 | 89.59 |
| TraesCS7D01G504300.3 | Wheat | mitochondrion | 80.64 | 88.92 |
| TraesCSU01G086900.1 | Wheat | mitochondrion | 80.39 | 88.41 |
| Os05t0271300-00 | Rice | cytosol, nucleus, plastid | 61.76 | 79.5 |
| Zm00001d009879_P002 | Maize | plastid | 70.59 | 76.6 |
| KXG21693 | Sorghum | plastid | 68.87 | 63.57 |
| GSMUA_Achr7P11130_001 | Banana | cytosol, nucleus, plastid | 47.79 | 57.18 |
| Solyc10g006210.1.1 | Tomato | cytosol | 13.24 | 50.0 |
| GSMUA_Achr7P11120_001 | Banana | cytosol, nucleus, plastid | 49.75 | 49.88 |
| VIT_19s0090g00940.t01 | Wine grape | cytosol | 40.44 | 48.96 |
| GSMUA_Achr2P15170_001 | Banana | cytosol | 40.2 | 48.24 |
| PGSC0003DMT400033487 | Potato | cytosol | 40.69 | 45.23 |
| KRH14361 | Soybean | cytosol | 37.99 | 44.93 |
| CDY54644 | Canola | cytosol | 35.05 | 42.69 |
| Bra035784.1-P | Field mustard | cytosol | 35.05 | 42.69 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 40.44 | 42.2 |
| PGSC0003DMT400037378 | Potato | cytosol | 29.9 | 41.22 |
| CDY29825 | Canola | plastid | 36.52 | 39.73 |
| AT3G20420.1 | Thale cress | plastid | 37.25 | 38.87 |
| HORVU7Hr1G082860.4 | Barley | plastid | 28.19 | 32.03 |
| AT5G45150.1 | Thale cress | cytosol | 26.96 | 11.49 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 26.96 | 6.73 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 26.23 | 6.35 |
| HORVU4Hr1G084890.7 | Barley | cytosol, nucleus, plastid | 30.88 | 6.31 |
| HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 25.49 | 6.18 |
| HORVU5Hr1G019300.8 | Barley | plastid | 20.34 | 5.63 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:12.5.1.12 | Gene3D:3.30.160.20 | UniProt:A0A287XW77 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090501 |
| GO:GO:0090502 | EnsemblPlantsGene:HORVU7Hr1G115100 | EnsemblPlants:HORVU7Hr1G115100.2 | InterPro:IPR000999 | InterPro:IPR014720 | InterPro:IPR036389 |
| PFAM:PF00636 | PFAM:PF14709 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PANTHER:PTHR14950 |
| PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00535 | SUPFAM:SSF54768 |
| SUPFAM:SSF69065 | UniParc:UPI000B47390E | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr7H:-:640790159..640799074
Molecular Weight (calculated)
44607.7 Da
IEP (calculated)
9.513
GRAVY (calculated)
-0.197
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: FCPWSPQIPF RFSSLTTASS PPSRFSQMAT RAAPARQPPA SRKRRASPPA LSAPVTLPPP GFVADRAEAA ARVERLLQYR FRDRSLLDEA LTHQSFSGGA
101: GGAASYQRLE FVGDAALGLA FSNFLYLTNP TVGPGALSTL RAANISTEKL ARVAVRHDLY PLLRRNCPRL DLLVGQFIES VKQELEDDLG ITPYGGSVFK
201: APKVLADIVE AIAAAVYVDC KFNIEELWKV TRFLFEPIVT AETIDEQPVS TLHELCQKHG KDIKFKSWQK GGTTVVNVFV GGVLVGTGSS EQMGIAKLNA
301: TRDALSKLHG GGNQQVLTTG VGHGLGVEVG ELRECKKKLI DQCNRKLWPK PIFKLEKEDG PAHDRTFVYS VQVETQGGIW LTLGDRMSRV KDAENSGAQK
401: MLEHLLKL
101: GGAASYQRLE FVGDAALGLA FSNFLYLTNP TVGPGALSTL RAANISTEKL ARVAVRHDLY PLLRRNCPRL DLLVGQFIES VKQELEDDLG ITPYGGSVFK
201: APKVLADIVE AIAAAVYVDC KFNIEELWKV TRFLFEPIVT AETIDEQPVS TLHELCQKHG KDIKFKSWQK GGTTVVNVFV GGVLVGTGSS EQMGIAKLNA
301: TRDALSKLHG GGNQQVLTTG VGHGLGVEVG ELRECKKKLI DQCNRKLWPK PIFKLEKEDG PAHDRTFVYS VQVETQGGIW LTLGDRMSRV KDAENSGAQK
401: MLEHLLKL
001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L
Arabidopsis Description
RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.