Factsheet for HORVU2Hr1G088270.9

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
TargetP:	secretory
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G075340.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20320.1	HORVU3Hr1G075340.1	AT3G62800.1	24352449

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G364700.2	Wheat	cytosol	94.68	95.38
TraesCS2D01G362700.1	Wheat	nucleus	94.56	95.14
TraesCS2B01G383300.2	Wheat	plastid	95.84	91.16
Os04t0509300-02	Rice	cytosol	74.43	73.45
Zm00001d025830_P011	Maize	cytosol, nucleus, plasma membrane	71.13	72.28
OQU81938	Sorghum	mitochondrion	71.87	70.57
GSMUA_Achr9P22460_001	Banana	cytosol, golgi, nucleus	45.99	55.17
VIT_11s0149g00120.t01	Wine grape	cytosol	37.25	49.15
Solyc07g005030.2.1	Tomato	cytosol	45.5	48.44
KRH03544	Soybean	nucleus	48.26	48.23
KRH20103	Soybean	nucleus	48.01	47.95
Bra002293.1-P	Field mustard	nucleus, plastid	44.71	44.55
CDY35811	Canola	nucleus	44.59	44.42
CDX92469	Canola	nucleus, plastid	44.53	44.34
AT5G20320.1	Thale cress	cytosol	44.28	42.54
HORVU5Hr1G019300.8	Barley	plastid	26.67	29.56
PGSC0003DMT400019213	Potato	cytosol, peroxisome, vacuole	6.91	27.97
HORVU7Hr1G082860.4	Barley	plastid	6.12	27.86
HORVU1Hr1G042710.5	Barley	cytosol, mitochondrion, nucleus	28.44	27.63
HORVU7Hr1G115100.2	Barley	plastid	6.73	26.96
HORVU3Hr1G092430.9	Barley	cytosol, nucleus, plastid	27.34	26.53
HORVU7Hr1G115000.1	Barley	nucleus	2.87	25.0
HORVU4Hr1G084890.7	Barley	cytosol, nucleus, plastid	28.32	23.18

Protein Annotations

Gene3D:1.10.1520.10	MapMan:16.10.1.3	MapMan:16.10.1.4.2	Gene3D:2.170.260.10	Gene3D:3.30.160.20	Gene3D:3.30.160.380
Gene3D:3.40.50.300	UniProt:A0A287IU54	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Dicer_dimer_sf	InterPro:Dicer_dimerisation_dom
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006353
GO:GO:0006396	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009616	GO:GO:0009791	GO:GO:0009944	GO:GO:0009987
GO:GO:0010050	GO:GO:0010216	GO:GO:0010267	GO:GO:0010492	GO:GO:0010599	GO:GO:0016787
GO:GO:0016891	GO:GO:0031047	GO:GO:0040029	GO:GO:0048608	GO:GO:0051214	GO:GO:0051607
GO:GO:0090501	GO:GO:0090502	EnsemblPlantsGene:HORVU2Hr1G088270	EnsemblPlants:HORVU2Hr1G088270.9	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR000999	InterPro:IPR001650	InterPro:IPR003100	InterPro:IPR005034	InterPro:IPR014001	InterPro:IPR014720
InterPro:IPR036389	InterPro:IPR038248	InterPro:P-loop_NTPase	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF00270
PFAM:PF00271	PFAM:PF00636	PFAM:PF02170	PFAM:PF03368	PFAM:PF14709	ScanProsite:PS00517
PFscan:PS50137	PFscan:PS50142	PFscan:PS50821	PFscan:PS51192	PFscan:PS51194	PFscan:PS51327
PANTHER:PTHR14950	PANTHER:PTHR14950:SF15	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00487
SMART:SM00490	SMART:SM00535	SMART:SM00949	SUPFAM:SSF101690	SUPFAM:SSF52540	SUPFAM:SSF54768
SUPFAM:SSF69065	UniParc:UPI000B473EB5	InterPro:dsRBD_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:-:632322356..632371458

Molecular Weight (calculated)

185185.0 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.222

Length

1635 amino acids

Sequence
(BLAST)

0001: PTAPSSSSPP LPIFCDSAVS RLLRICFGAM QRGFEAEPEY QLDLCKRALG ENIIVYLGTG CGKTHIAVLL IYELGHLIRK PRRDVCIFLA PTVPLVLQQA
0101: TVIANSTNFR VQSYYGDGKN PRDHGDWETE MGESEVLVMT PQILLHSLRH CFIKMDSIAL LIFDECHHAQ AHKRHPYAQI MKQEFYSNDM VKPPRIFGMT
0201: ASPVMGKGGS NKLNYTKCIN SLEELLHAKV CSVDNAELES VLAFPDMEVY KYVPLGHSNL TVTYNKELDR SKLESERILR ESLYDFKDSQ KKLKSLGRLH
0301: GNLVFCLQEL GSFGALQAAK AFLSFDGDVL DRKESDMNNN STRFKHHYLN KAISVLNCNI LDGTHDDSFN LEMLKEPFFS NKIVVLINIL SRYRLEEKMK
0401: CIVFVKRITV ARAIADILQN LKGLDLWKCE FLVGRHSGPK NMSRQKMDAI VENFSSGEVN LLIATSVGEE GLDIQTCCLV VRFDLPETVA SFIQSRGRAR
0501: MTNSKYVVLL ERGNHSQEKL LNDYIDGEGI MNGEIDLRTS NDVFDHLEEK SYRVEKTGAS ISTACSVSLL HRYCYNLPKD MFFNPSPAFI YIDDTEGIIC
0601: RVILPPNAAF RQVDGQPCQS NDEAKRDACL EAYVKLYELG ALTDFLLPGS GSRKNSASTI NGSANNSHDD ESLREELHEM LIPTILKPST CKLDCPLNLH
0701: FYYIQFFPIP ADRHYRIFGL FVINPLPMEA EKLEVDLHLA RGRIVKAGMK HLGTISFDEE QMMLGRNFQE MFLKVLLDRS EFTVSHVMLG NNETLLFNST
0801: FYLLLPIKQE LYGDIFMIDW PTVKRCLSSP VFKDPTGVSV HGSYLPDESL RLLDNMYSKT DVVGSLIFAP HINTFFVIDV ILNELNARSE YDGATYEDHY
0901: KERFGIKLSH PEQPLLHAKQ LCNLHNLLHD RLRETTGREL MEHFVELPPE LCSLKIIGFS KDMCSSLSLL PSLMCRLENL LVAIELKDVM LSSFSEASQI
1001: SASGILEALT TERCLERISL ERFEVLGDAF LKYVVGRHNF LTYEELDEGQ LTSRRSAIVN NSHLYELSIK RNLQVYIRDQ HFEPTQFIAL GRPCKVVCNA
1101: DTEVNIHTDS RENCNLRCTK SHHWLHRKTI ADAVESLVGA FLVEGGFKAA FAFLFWVGID VDYKDSSLYR VLDASSINLS LTSHTNVDEL EELIGYNFKH
1201: KGLILEAFVH PSFNKHSGGC YQKLEFLGDA VLEYLITSYL YSAYPDLKPG QITDLKSLAV SNNSLAYVAV QKGIHKYLIK DSNYLSTAVN KFENYIRLPN
1301: SEKDLVEEPA CPKVLGDIVE SCVAAVLLDS GFNLKCVWTL VLMLLEPVLS FSDMHMNPMR EIRELCQCHE LELGLPKPMK ADGEYHVKVE VNINSQVISS
1401: AAANRNSKVA RKFAAQETLS KLKNYGYTHK NKSLEEILRD ARKKEPELLG YNEEPIKVEA DVSAEINNLK IGKERDANIS FQNTEIFIRG TLRTSSQRTA
1501: GDTMFSKDDV SIERNNQLKV AKQNGCLPKG TTQKNIKKEY HGHMVNKTAK SFLFEVCAVS YWKPPEFELC KEEGPSHLRR FTYKVTVQIS GPSETLLECY
1601: SDAQLQKKAA QEHAAQGALW YLKQHGYLPK DEVHV

Best Arabidopsis Sequence Match ( AT5G20320.1 )
(BLAST)

0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC

Arabidopsis Description

DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.