Factsheet for HORVU3Hr1G075340.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G075340.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	HORVU3Hr1G075340.1	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G295400.2	Wheat	nucleus	88.44	83.2
TraesCS3B01G341600.1	Wheat	mitochondrion, nucleus	79.33	83.12
TraesCS3D01G307700.5	Wheat	mitochondrion, nucleus	87.92	82.84
TraesCS3B01G341800.9	Wheat	mitochondrion, nucleus	87.22	82.18
TraesCS3B01G341700.4	Wheat	mitochondrion, nucleus	87.04	82.01
TraesCS3A01G527500.1	Wheat	mitochondrion, nucleus	16.64	53.98
Zm00001d022648_P001	Maize	mitochondrion, nucleus	21.54	50.0
Os01t0772000-01	Rice	mitochondrion, nucleus	37.48	48.53
KXG33474	Sorghum	mitochondrion	39.23	44.44
VIT_08s0056g01550.t01	Wine grape	plastid	11.91	40.96
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	15.59	30.9
Bra007702.1-P	Field mustard	nucleus	15.59	26.97
CDX76663	Canola	cytosol	15.59	26.57
CDY11449	Canola	nucleus	15.24	26.28
KRH57881	Soybean	nucleus	21.89	24.8
AT3G62800.1	Thale cress	nucleus	15.41	24.79
HORVU1Hr1G021530.1	Barley	nucleus	16.11	15.86
HORVU5Hr1G076910.7	Barley	nucleus	10.86	14.87
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	10.16	14.22
HORVU1Hr1G041820.1	Barley	nucleus	12.96	14.04
HORVU5Hr1G047100.5	Barley	nucleus	12.26	12.22

Protein Annotations

EnsemblPlants:HORVU3Hr1G075340.1	EnsemblPlantsGene:HORVU3Hr1G075340	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF114	PFAM:PF00035
PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00029574A8	UniProt:M0WP43
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:563053326..563061402

Molecular Weight (calculated)

61800.1 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.616

Length

571 amino acids

Sequence
(BLAST)

001: MFKAQLNQLC QQRRWPAPDY AHRSEGPAHL LRFRATVAVN GEVYHSPDDG GGSGTAKEAH NLAAKAAFER LSALPPPPPP QSETQLPYKS QLQVYAQKRH
101: KDLPSYDTIR NGPPHAPLFR STVTIDGRTF ESPQDYHTTK EAEFAAARVA LMSLSQEANP SEQMLVGSAS CISLPGIQIN HKLQLQIYAQ KRGKQLPKYR
201: RTQEGPSHAP LFKSTVTIDG QTFESPQYCQ TIKESENAAA NLALMSLTQE VQGMQYINPR HELAEKEGCS LPVYNTSSDD SKNSSISKST VHTQGGSFQE
301: GPGNTKKQKQ MTVAELAFQP SKDRSQMQQG TETLAEQEVK IVESDSSLPR VSMVASDGQN DSNATAHDSC SVNSSIDLPV ADKTRSLDEP TQSGSMENNK
401: PAAPEPSIKA EVMDLTQECT PPPSVSAPPT DTLNLVATTE SSTEAEVMDV AEPSAEAEVD IPEPRIKAEV MDVAEPSAEA KVDVPEPSIK AEVKSSTPEH
501: TSLPLGSTPP TNISNLAAKA TAVPDSARCG YSMSTNRIQV YPCRPNLELP EGATVLPFSD DKWVAVSLPF P

Best Arabidopsis Sequence Match ( AT3G62800.3 )
(BLAST)

001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP

Arabidopsis Description

DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.