Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 97.25 | 87.46 |
| TraesCS3B01G341800.9 | Wheat | mitochondrion, nucleus | 96.88 | 87.13 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 94.68 | 85.01 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 94.13 | 84.65 |
| HORVU3Hr1G075340.1 | Barley | mitochondrion | 83.12 | 79.33 |
| Zm00001d022648_P001 | Maize | mitochondrion, nucleus | 21.65 | 47.97 |
| Os01t0772000-01 | Rice | mitochondrion, nucleus | 36.15 | 44.67 |
| KXG33474 | Sorghum | mitochondrion | 38.53 | 41.67 |
| VIT_08s0056g01550.t01 | Wine grape | plastid | 11.74 | 38.55 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 15.05 | 28.47 |
| Bra007702.1-P | Field mustard | nucleus | 15.6 | 25.76 |
| CDX76663 | Canola | cytosol | 15.78 | 25.67 |
| CDY11449 | Canola | nucleus | 15.23 | 25.08 |
| KRH57881 | Soybean | nucleus | 21.65 | 23.41 |
| AT3G62800.1 | Thale cress | nucleus | 15.23 | 23.38 |
| TraesCS5B01G289100.1 | Wheat | nucleus | 12.48 | 18.58 |
| TraesCS6B01G200200.1 | Wheat | nucleus | 8.81 | 15.84 |
| TraesCS1B01G119000.1 | Wheat | nucleus | 15.23 | 14.36 |
| TraesCS1B01G174000.1 | Wheat | nucleus | 13.39 | 13.85 |
| TraesCS5B01G148100.2 | Wheat | nucleus | 11.74 | 12.08 |
| TraesCS5B01G148000.1 | Wheat | plastid | 5.32 | 8.43 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G341600.1 | EnsemblPlantsGene:TraesCS3B01G341600 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF114 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:548369654..548375828
Molecular Weight (calculated)
59385.6 Da
IEP (calculated)
4.959
GRAVY (calculated)
-0.568
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKAQLNQLC QQRRWPAPDY THRSEGPAHS LRFRATVTVN GEVYHSPDDD DGFSTAKEAQ NLAAKAAFER LSALPPPPPP QSETQLPYKS QLQVHAQKRH
101: KDLPSYDTIR SGPPHAPLFR STVTIDGRKF ESPQDYHTTK EAEFAAARVA LMSLCQEANP SEQMPVGSAS CISLPGIQIN HKLQLQMYAQ KRGKQLPWYD
201: RIQEGPSHAP RFKSIVTIDG QTFESPQYCH TIKEAEYAAA NLALVSLAQE VQGMQYTNPR HELAEKEGSS LPVCNTSSDN LKDSSISKST VHTQGESFQE
301: GPGNNKKQKQ MTVAAFQPSK DTEHDSCSVG SRIYLPVADK TQSLDEPIKS GSMENVKPAA PEPSIKAEVI DLTQECRSPP LVSVPPTDML NLVATTSTVP
401: VALQSPVETI QPVKMENDKP AIPEPSTEAE VMDVAEPSAE AEGMDVAEPS AEAEVDVPEP SIEDEVMNST SEHTSLPLGS MPPTNTSSLA VKATAVPVDS
501: ARCSYSMSTN RIQIYPCRPD LKLPEGATVL PFSDDKWVAV SLPLP
101: KDLPSYDTIR SGPPHAPLFR STVTIDGRKF ESPQDYHTTK EAEFAAARVA LMSLCQEANP SEQMPVGSAS CISLPGIQIN HKLQLQMYAQ KRGKQLPWYD
201: RIQEGPSHAP RFKSIVTIDG QTFESPQYCH TIKEAEYAAA NLALVSLAQE VQGMQYTNPR HELAEKEGSS LPVCNTSSDN LKDSSISKST VHTQGESFQE
301: GPGNNKKQKQ MTVAAFQPSK DTEHDSCSVG SRIYLPVADK TQSLDEPIKS GSMENVKPAA PEPSIKAEVI DLTQECRSPP LVSVPPTDML NLVATTSTVP
401: VALQSPVETI QPVKMENDKP AIPEPSTEAE VMDVAEPSAE AEGMDVAEPS AEAEVDVPEP SIEDEVMNST SEHTSLPLGS MPPTNTSSLA VKATAVPVDS
501: ARCSYSMSTN RIQIYPCRPD LKLPEGATVL PFSDDKWVAV SLPLP
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.