Factsheet for Solyc01g056620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g056620.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	Solyc01g056620.2.1	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0056g01550.t01	Wine grape	plastid	30.9	53.61
CDX76663	Canola	cytosol	38.19	32.84
CDY11449	Canola	nucleus	37.5	32.63
Bra007702.1-P	Field mustard	nucleus	37.15	32.42
EES16051	Sorghum	cytosol	21.88	31.82
AT3G62800.1	Thale cress	nucleus	37.15	30.14
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	18.4	26.77
EER88251	Sorghum	cytosol, mitochondrion, nucleus	22.22	26.34
KRH57881	Soybean	nucleus	43.4	24.8
Zm00001d022648_P001	Maize	mitochondrion, nucleus	19.79	23.17
Os01t0772000-01	Rice	mitochondrion, nucleus	34.38	22.45
TraesCS3A01G527500.1	Wheat	mitochondrion, nucleus	12.5	20.45
Solyc02g091460.2.1	Tomato	nucleus	12.85	20.22
Solyc11g069460.1.1	Tomato	nucleus	27.78	19.32
KXG33474	Sorghum	mitochondrion	32.29	18.45
Solyc01g009190.1.1	Tomato	nucleus	27.43	17.87
HORVU3Hr1G075340.1	Barley	mitochondrion	30.9	15.59
TraesCS3B01G341600.1	Wheat	mitochondrion, nucleus	28.47	15.05
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	21.88	14.55
TraesCS3A01G295400.2	Wheat	nucleus	29.86	14.17
TraesCS3B01G341800.9	Wheat	mitochondrion, nucleus	29.51	14.03
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	26.74	13.92
TraesCS3D01G307700.5	Wheat	mitochondrion, nucleus	29.17	13.86
TraesCS3B01G341700.4	Wheat	mitochondrion, nucleus	28.82	13.7

Protein Annotations

EnsemblPlants:Solyc01g056620.2.1	EnsemblPlantsGene:Solyc01g056620.2	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	ncoils:Coil	PANTHER:PTHR10910	PANTHER:PTHR10910:SF114
PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000276190F
UniProt:K4AVM8	MapMan:16.10.1.4.1	:	:	:	:

Description

No Description!

Coordinates

chr1:+:55022248..55030063

Molecular Weight (calculated)

31792.5 Da

IEP (calculated)

6.105

GRAVY (calculated)

-0.399

Length

288 amino acids

Sequence
(BLAST)

001: MLHLYKSRLQ HYAQKQNLTL PVYSSELDGP PHARRFRSKV TIDGVTYETQ EFFSTLKEAE HAAAKVAFES LALNDTQEDE GLYKTLLQEL AQKEALLFPV
101: YDTARTGPPH APVFRSMVEV GDRTFQGQEA KTKKQAEMNA AKVAYNALVK GGQLDEPLQV LPVSSKCVVA DVSLLVVQQK TKLIIEELSL QNEEADTNAK
201: RHRCSSAPNT YSLIRDHRPA APFVASDSSD AVAESADSDT YAGTSILPSE KIFIFPRKAN MNLPSGASVL PCSDEKWVAA SLELNQNH

Best Arabidopsis Sequence Match ( AT3G62800.2 )
(BLAST)

001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP

Arabidopsis Description

DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.