Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 1
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060309 | Potato | cytosol, nucleus, plastid | 89.87 | 98.22 |
| Solyc11g069460.1.1 | Tomato | nucleus | 42.86 | 57.25 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 43.04 | 52.77 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, nucleus, plastid | 41.05 | 51.24 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, nucleus, plastid | 42.31 | 49.79 |
| Zm00001d032679_P001 | Maize | nucleus | 40.33 | 43.3 |
| Os10t0480500-01 | Rice | cytosol, nucleus, plastid | 40.14 | 43.19 |
| TraesCS1B01G174000.1 | Wheat | nucleus | 39.6 | 41.56 |
| HORVU1Hr1G041820.1 | Barley | nucleus | 39.6 | 41.56 |
| TraesCS1A01G157700.3 | Wheat | nucleus | 39.42 | 41.44 |
| TraesCS1D01G155300.1 | Wheat | nucleus | 39.6 | 41.17 |
| Zm00001d014011_P001 | Maize | mitochondrion, nucleus, plastid | 38.7 | 41.15 |
| KXG38314 | Sorghum | mitochondrion, nucleus | 39.42 | 40.37 |
| Solyc03g118950.1.1 | Tomato | cytosol, nucleus, plastid | 10.31 | 28.79 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 13.92 | 26.74 |
| Solyc02g091460.2.1 | Tomato | nucleus | 6.15 | 18.58 |
| Solyc01g009190.1.1 | Tomato | nucleus | 12.84 | 16.06 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 12.3 | 15.7 |
Protein Annotations
| EnsemblPlants:Solyc05g056100.2.1 | EnsemblPlantsGene:Solyc05g056100.2 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF141 | PFAM:PF00035 |
| PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0002767457 | UniProt:K4C2T4 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:65471661..65478185
Molecular Weight (calculated)
60213.0 Da
IEP (calculated)
8.759
GRAVY (calculated)
-0.409
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEVFESPNYC STLRQAEHSA AEVALNSLSN RGPSNSLAAR ILDETGVYKN LLQEVSQRVG
101: ASLPAYTTFR SGLGHLPVFT CTVELAGVTF TGESAKNKKQ AEKNAAMAAW SSLKLLAQQS ESAKPDRRRN DEQEHVTVAR ALQRYILKAR AARVSFPIKF
201: PTPNPRPSSV QQLSSTTSKL LPLICPRTAP RSRPVSPLCL KPASQSRPID NTGSDASLSP RTAQTINNIL KDSFAMDSHR VRPEKFPAAG AAPYIPVRHF
301: GPHHRMAPPV TIRNAIPVFS APPLPQSSQP PRVMRPPGLG VAPPVCIRQA VPVYAAPPVR AEELSTLDRV MRHSGLGMAP VYAVPSVPKA PLLVDEPLAS
401: KAPEMQVLDL PTCKAVLGKA ESPHDHSEEK SCSEVQPTKR EEPLDFEVSR SATMPVEGTK VAAEEKPLDF EVSRSPTMPV EGTMVASEEK PLDFEVSRSA
501: TMPVEGTKVA AEEKPLDFEV SRSATMPVEG TKVAAEEKPH DSLEIESLKQ LKI
101: ASLPAYTTFR SGLGHLPVFT CTVELAGVTF TGESAKNKKQ AEKNAAMAAW SSLKLLAQQS ESAKPDRRRN DEQEHVTVAR ALQRYILKAR AARVSFPIKF
201: PTPNPRPSSV QQLSSTTSKL LPLICPRTAP RSRPVSPLCL KPASQSRPID NTGSDASLSP RTAQTINNIL KDSFAMDSHR VRPEKFPAAG AAPYIPVRHF
301: GPHHRMAPPV TIRNAIPVFS APPLPQSSQP PRVMRPPGLG VAPPVCIRQA VPVYAAPPVR AEELSTLDRV MRHSGLGMAP VYAVPSVPKA PLLVDEPLAS
401: KAPEMQVLDL PTCKAVLGKA ESPHDHSEEK SCSEVQPTKR EEPLDFEVSR SATMPVEGTK VAAEEKPLDF EVSRSPTMPV EGTMVASEEK PLDFEVSRSA
501: TMPVEGTKVA AEEKPLDFEV SRSATMPVEG TKVAAEEKPH DSLEIESLKQ LKI
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI
Arabidopsis Description
DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.