Factsheet for Os10t0480500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os03t0743500-02
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	Os01t0267900-01	AT2G41090.1	17360592
AT2G28380.1	Os01t0279300-01	AT2G41090.1	17360592
AT2G28380.1	Os01t0810300-01	AT2G41090.1	17360592
AT2G28380.1	Os03t0319300-01	AT2G41090.1	17360592
AT2G28380.1	Os05t0491000-01	AT2G41090.1	17360592
AT2G28380.1	Os05t0491100-01	AT2G41090.1	17360592
AT2G28380.1	Os07t0687200-02	AT2G41090.1	17360592
AT2G28380.1	Os12t0603800-00	AT2G41090.1	17360592
AT2G28380.1	Os01t0267900-01	AT2G41100.1	17360592
AT2G28380.1	Os01t0279300-01	AT2G41100.1	17360592
AT2G28380.1	Os01t0810300-01	AT2G41100.1	17360592
AT2G28380.1	Os03t0319300-01	AT2G41100.1	17360592
AT2G28380.1	Os05t0491000-01	AT2G41100.1	17360592
AT2G28380.1	Os05t0491100-01	AT2G41100.1	17360592
AT2G28380.1	Os07t0687200-02	AT2G41100.1	17360592
AT2G28380.1	Os12t0603800-00	AT2G41100.1	17360592
AT2G28380.1	Os03t0743500-02	AT4G14640.1	17360592
AT2G28380.1	Os01t0267900-01	AT5G21274.1	17360592
AT2G28380.1	Os01t0279300-01	AT5G21274.1	17360592
AT2G28380.1	Os01t0810300-01	AT5G21274.1	17360592
AT2G28380.1	Os03t0319300-01	AT5G21274.1	17360592
AT2G28380.1	Os05t0491000-01	AT5G21274.1	17360592
AT2G28380.1	Os05t0491100-01	AT5G21274.1	17360592
AT2G28380.1	Os07t0687200-02	AT5G21274.1	17360592
AT2G28380.1	Os12t0603800-00	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	22.76	75.48
Zm00001d032679_P001	Maize	nucleus	72.76	72.62
HORVU1Hr1G041820.1	Barley	nucleus	73.54	71.73
TraesCS1A01G157700.3	Wheat	nucleus	73.15	71.48
KXG38314	Sorghum	mitochondrion, nucleus	74.9	71.3
TraesCS1B01G174000.1	Wheat	nucleus	72.96	71.16
KRG90046	Soybean	nucleus	12.45	71.11
TraesCS1D01G155300.1	Wheat	nucleus	73.54	71.05
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	71.6	70.77
KRH58007	Soybean	nucleus	11.67	66.67
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	46.11	57.38
KRH25014	Soybean	cytosol, nucleus, plastid	43.97	56.36
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	48.64	55.43
KRH29911	Soybean	cytosol, nucleus, plastid	44.16	55.23
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	42.22	55.22
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	47.47	55.08
PGSC0003DMT400020800	Potato	nucleus	43.39	54.52
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	43.19	54.01
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	44.75	53.49
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	44.75	53.49
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	48.83	53.4
Solyc11g069460.1.1	Tomato	nucleus	42.8	53.14
CDY30490	Canola	nucleus	44.75	53.0
Bra035704.1-P	Field mustard	nucleus	44.36	52.66
AT2G28380.1	Thale cress	cytosol	44.16	52.3
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	43.97	52.19
CDY15737	Canola	cytosol	43.58	51.73
PGSC0003DMT400060309	Potato	cytosol, nucleus, plastid	43.19	43.87
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	43.19	40.14
Os09t0508500-02	Rice	nucleus	29.38	37.38
Os05t0150400-01	Rice	cytosol, nucleus	32.68	27.86
Os01t0772000-01	Rice	mitochondrion, nucleus	16.54	19.27
Os08t0384100-01	Rice	cytosol	11.09	18.27
Os05t0307400-01	Rice	cytosol	14.79	17.39
Os11t0109900-01	Rice	cytosol	14.79	16.07
Os12t0109900-02	Rice	cytosol	5.84	6.49

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	EntrezGene:4348920	ProteinID:AAK21352.1	ProteinID:AAP54300.1	EMBL:AK066524
ProteinID:BAF26788.1	ProteinID:BAT11333.1	ProteinID:EAZ16445.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0035196	GO:GO:0040029	GO:GO:0070919	InterPro:IPR014720
EnsemblPlantsGene:Os10g0480500	EnsemblPlants:Os10t0480500-01	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141
UniProt:Q9AV50	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000009F6B6	RefSeq:XP_015614779.1	InterPro:dsRBD_dom
SEG:seg	:	:	:	:	:

Description

DRB6Double-stranded RNA-binding-like domain containing protein. (Os10t0480500-01)

Coordinates

chr10:-:18102674..18108764

Molecular Weight (calculated)

56081.1 Da

IEP (calculated)

9.968

GRAVY (calculated)

-0.504

Length

514 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPAY TCLREGPDHA PRFKAAVNFN GEQFESPGFF TTLRQAEHAA AEVALAALAR RGPSYSLAAR ILDETGVYKN LLQEVAQRVG
101: APLPSYTTER SGLGHLPVFT CTVELAGITF TGDPAKNKKQ AEKNAASAAW SSLRQLVRQE ASSSNEPESN DEQEQIRIAR ALLNYRLKEK MAMANNPHAS
201: PFPKKFPMQP ERRTAFPQSS HSSYSKILPL FRPKSNSRSR PESPAASDAA SQTPFRPTES PNPRSRFPAA EAAPYVPVGH FRMPCHSMAP PVTVRTSIPV
301: FSAPPLPPPG ARTQQLPPLM SHPPPIRMAS PVRIRPAPPL FTPSAVQGPK PMMPVQIKDV QHQQIKETRS PVMPVQVKDA QNQLLKGSLS PVIPVQIKDV
401: QSQPPKEALS PAIPVQIKDV QLQPRNEPVS IGKGVVPLPA IRPPVKVEAP AEVKEASQPV AGSSVVQCKA DTSPDSLPKT QLKTANADNA DAKDDHLPVD
501: AEEVEDIIRH LELK

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.