Factsheet for Os05t0150400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G099700.1	Wheat	nucleus	65.17	68.83
TraesCS1A01G091200.2	Wheat	nucleus	65.01	68.77
HORVU1Hr1G021530.1	Barley	nucleus	65.17	67.76
TraesCS1B01G119000.1	Wheat	nucleus	64.51	67.3
KXG21311	Sorghum	nucleus	62.85	66.14
Zm00001d024861_P007	Maize	nucleus	55.06	64.59
KRH68665	Soybean	nucleus	35.32	39.52
KRG96921	Soybean	nucleus	34.83	39.03
VIT_14s0030g01280.t01	Wine grape	nucleus	36.15	37.85
GSMUA_Achr5P00420_001	Banana	nucleus	34.99	36.76
Os09t0508500-02	Rice	nucleus	24.21	36.14
Os10t0480500-01	Rice	cytosol, nucleus, plastid	27.86	32.68
VIT_05s0020g01850.t01	Wine grape	nucleus	36.98	27.0
Os01t0772000-01	Rice	mitochondrion, nucleus	14.59	19.95
Os05t0307400-01	Rice	cytosol	12.27	16.93
Os08t0384100-01	Rice	cytosol	8.62	16.67
Os11t0109900-01	Rice	cytosol	12.27	15.64
Os12t0109900-02	Rice	cytosol	5.47	7.14

Protein Annotations

EnsemblPlants:Os05t0150400-01	EnsemblPlantsGene:Os05g0150400	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF104	PFAM:PF00035
PFscan:PS50137	ProteinID:BAS92299.1	SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00039387A8
UniProt:A0A0P0WIA8	MapMan:35.1	:	:	:	:

Description

Double-stranded RNA-binding domain containing protein. (Os05t0150400-01)

Coordinates

chr5:-:2884880..2889475

Molecular Weight (calculated)

65861.5 Da

IEP (calculated)

9.115

GRAVY (calculated)

-0.649

Length

603 amino acids

Sequence
(BLAST)

001: LDRIISELAG MYKNQLQELA QRSCFNLPSY ACIREGPDHA PRFKATVNFN GETFESPAFC STLRLAEHAA AEVALNELSK RGPSSSLAAK VLDETGIYKN
101: LLQETAHRAG LKLPVYTTIR SGPGHTPVFT CTVELAGMTF TGNPGKTKKQ AQKNAAMAAW SELKQLPRVG EPSSSSCPPD HDDDDQEQII VARTLASLNQ
201: TNGGKTPQQK EKQQSSNRPS SRRPSYPKSN ASFYGRLHLQ KHAYPSVPPE QAMYHMWHQV QATQQKPHFP MVPTMGSTGF PPPPTVLHMY PPPRGQFTMP
301: SSQDGLGLIP CYPEASPVLP RYFSPYPASF VPRRPLPVNV HKIHEKRLVG ADMVELPDAA VFSRYTAPDF SGTSENAVQD NKKEEYTESS PASEQESKSH
401: TASSSATRSP SQQLESNQDI EIMGGLRLES KKPAEQPPES SPSRVNPVLL CETGQRHHYS SVRHGDPVHR NSPQISVATS PSPIRRGDPA HINIPQISVA
501: TPPECRSPRA QAPPRFGTRM PVNLPSSLYQ QRPPWLAASV TIRTTIPVCS ARPNVVNSSA GAAQPAVQIL SASPRKEEPE ARTNTSDTSN AATASSELNK
601: LHI

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.