Factsheet for Os08t0384100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G172500.1	Wheat	cytosol	44.23	48.59
TraesCS6D01G161700.2	Wheat	nucleus	44.23	45.7
TraesCS6B01G200200.1	Wheat	nucleus	44.23	45.54
EES14943	Sorghum	nucleus	38.14	39.93
KRH63090	Soybean	nucleus	18.59	37.18
Zm00001d032326_P002	Maize	cytosol, plastid	37.82	32.6
KRH62980	Soybean	nucleus	19.87	31.16
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	18.91	29.8
PGSC0003DMT400014406	Potato	nucleus	18.91	27.31
PGSC0003DMT400088113	Potato	nucleus	14.1	25.58
VIT_14s0006g01440.t01	Wine grape	nucleus	27.24	25.53
GSMUA_Achr2P22850_001	Banana	cytosol	22.76	22.98
PGSC0003DMT400085647	Potato	cytosol, nucleus	19.23	22.64
KRH01275	Soybean	nucleus	22.12	20.66
KRH30959	Soybean	mitochondrion	16.99	19.2
Os05t0307400-01	Rice	cytosol	25.32	18.08
Os11t0109900-01	Rice	cytosol	25.96	17.12
KRH15123	Soybean	nucleus	24.04	16.34
KRH73012	Soybean	nucleus	14.42	15.41
Os01t0772000-01	Rice	mitochondrion, nucleus	20.51	14.51
Os09t0508500-02	Rice	nucleus	16.67	12.87
Os10t0480500-01	Rice	cytosol, nucleus, plastid	18.27	11.09
Os05t0150400-01	Rice	cytosol, nucleus	16.67	8.62
Os12t0109900-02	Rice	cytosol	9.94	6.71

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	EntrezGene:4345448	EMBL:AK065829	ProteinID:BAD05825.1	ProteinID:BAF23614.1
ProteinID:BAT05244.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0003824
GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030422	GO:GO:0031053	GO:GO:0031054
GO:GO:0040029	GO:GO:0090502	InterPro:IPR014720	EnsemblPlantsGene:Os08g0384100	EnsemblPlants:Os08t0384100-01	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF8	UniProt:Q6YW64	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI000022F31B	RefSeq:XP_015650897.1	InterPro:dsRBD_dom	SEG:seg	:	:

Description

DRB4Double-stranded RNA-binding-like domain containing protein. (Os08t0384100-01)

Coordinates

chr8:-:18103272..18108359

Molecular Weight (calculated)

34199.4 Da

IEP (calculated)

8.555

GRAVY (calculated)

-0.570

Length

312 amino acids

Sequence
(BLAST)

001: MAAATAEPLA VAVAVAHTAT AGTDHSPAPL PPPPPHCNYK SKLQEYLQQA NKQLPIYCTK CKGEHHQLKF KSTVMVDGEE FSSTFCHRRV KDAEQDAAKV
101: AYDTLLERKE TETDDTDVFE LIDQDVVFSK SILHEYTTKT KTDQPEYSVT KTEGSVTPYV SSVSFAGHTY TGGAARNKKD AEQKAARAAV KSLLATNYTS
201: MAKIVRSKEK LIRAISPSGY NKGIDSNPTN KKLPFAPIKF TPPSIFKLYD GEIDMLSVPQ ALFAPLVAAE EPKVRPAAEP ASNPSEQAVH VSKKHKDNKV
301: RGPEVKEERV AQ

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.