Factsheet for Os01t0772000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0772000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	Os01t0772000-01	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022648_P001	Maize	mitochondrion, nucleus	30.16	54.06
VIT_08s0056g01550.t01	Wine grape	plastid	17.91	47.59
KXG33474	Sorghum	mitochondrion	52.61	46.03
TraesCS3A01G527500.1	Wheat	mitochondrion, nucleus	17.91	44.89
HORVU3Hr1G075340.1	Barley	mitochondrion	48.53	37.48
TraesCS3B01G341600.1	Wheat	mitochondrion, nucleus	44.67	36.15
TraesCS3D01G307700.5	Wheat	mitochondrion, nucleus	48.53	35.31
TraesCS3A01G295400.2	Wheat	nucleus	48.07	34.93
TraesCS3B01G341800.9	Wheat	mitochondrion, nucleus	47.85	34.82
TraesCS3B01G341700.4	Wheat	mitochondrion, nucleus	47.85	34.82
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	22.45	34.38
Bra007702.1-P	Field mustard	nucleus	22.68	30.3
CDY11449	Canola	nucleus	22.45	29.91
CDX76663	Canola	cytosol	22.22	29.25
KRH57881	Soybean	nucleus	31.75	27.78
AT3G62800.1	Thale cress	nucleus	21.77	27.04
Os08t0384100-01	Rice	cytosol	14.51	20.51
Os09t0508500-02	Rice	nucleus	17.46	19.06
Os10t0480500-01	Rice	cytosol, nucleus, plastid	19.27	16.54
Os05t0150400-01	Rice	cytosol, nucleus	19.95	14.59
Os05t0307400-01	Rice	cytosol	14.29	14.42
Os11t0109900-01	Rice	cytosol	14.29	13.32
Os12t0109900-02	Rice	cytosol	7.94	7.58

Protein Annotations

MapMan:16.10.1.4.1	Gene3D:3.30.160.20	EntrezGene:4324620	EMBL:AK069455	ProteinID:BAD82066.1	ProteinID:BAS74562.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488
GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	InterPro:IPR014720	EnsemblPlantsGene:Os01g0772000	EnsemblPlants:Os01t0772000-01	PFAM:PF00035	PFscan:PS50137
PANTHER:PTHR10910	PANTHER:PTHR10910:SF114	UniProt:Q5N8Z0	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000049E964
RefSeq:XP_015639013.1	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

DRB1Similar to Double-stranded RNA-binding protein 1. (Os01t0772000-01)

Coordinates

chr1:-:32586928..32591875

Molecular Weight (calculated)

47058.2 Da

IEP (calculated)

7.019

GRAVY (calculated)

-0.337

Length

441 amino acids

Sequence
(BLAST)

001: MYKSRLQELC QQRRWAPPEY THRCAGPAHA PLFGATVSVN GVEFRTPEDA ARSAKEAHNI AAKAAFDHLS SLPLPPPPPP SENQSSYKSQ LQIYAQKKGK
101: LLPSYQTIRE GPGHASRFKS VVTVDGKAFE SPEYFHTVKE AESAAAKLAL MSLPQEASSS EQVPVQPLSY KNLLQELAQK HGFSLPVYST TSDGSVQVPM
201: FKSTVVFQDG SFQGEPANTK KQAEMNAARV AFQHFEDRRK NALSSTVLRG PHLGQGTVHI SAGQVKIAEP VFSVPLASTA TSHSATGATD RDYHSLGSTN
301: PLPIAKSTNC ADVHIQPCEF KDEKPAFPEP KTVLEVMDSS PELTPLEDAY SAPVASTSTV SSSGCGSDPL ASASTVNSTG CGSVPLASAS TVSSTGCGCS
401: LLTNRVQVYP RRPDLVLPEG ATVLPFSDDV WVAVSLPTLN H

Best Arabidopsis Sequence Match ( AT3G62800.2 )
(BLAST)

001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP

Arabidopsis Description

DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.