Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 97.85 | 97.85 |
| TraesCS3B01G341600.1 | Wheat | mitochondrion, nucleus | 87.13 | 96.88 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 95.38 | 95.22 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 95.05 | 95.05 |
| HORVU3Hr1G075340.1 | Barley | mitochondrion | 82.18 | 87.22 |
| Zm00001d022648_P001 | Maize | mitochondrion, nucleus | 19.97 | 49.19 |
| Os01t0772000-01 | Rice | mitochondrion, nucleus | 34.82 | 47.85 |
| KXG33474 | Sorghum | mitochondrion | 37.62 | 45.24 |
| VIT_08s0056g01550.t01 | Wine grape | plastid | 10.89 | 39.76 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 14.03 | 29.51 |
| Bra007702.1-P | Field mustard | nucleus | 14.36 | 26.36 |
| CDX76663 | Canola | cytosol | 14.36 | 25.97 |
| CDY11449 | Canola | nucleus | 14.03 | 25.68 |
| KRH57881 | Soybean | nucleus | 19.8 | 23.81 |
| AT3G62800.1 | Thale cress | nucleus | 13.86 | 23.66 |
| TraesCS5B01G289100.1 | Wheat | nucleus | 12.21 | 20.22 |
| TraesCS6B01G200200.1 | Wheat | nucleus | 8.09 | 16.17 |
| TraesCS1B01G119000.1 | Wheat | nucleus | 14.36 | 15.05 |
| TraesCS1B01G174000.1 | Wheat | nucleus | 12.21 | 14.04 |
| TraesCS5B01G148100.2 | Wheat | nucleus | 11.22 | 12.83 |
| TraesCS5B01G148000.1 | Wheat | plastid | 4.62 | 8.14 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G341800.9 | EnsemblPlantsGene:TraesCS3B01G341800 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF114 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:548840852..548849515
Molecular Weight (calculated)
65725.9 Da
IEP (calculated)
4.623
GRAVY (calculated)
-0.576
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKAQLNQLC QQRRWPAPDY THRSEGPAHS LRFRATVTVN GEVYHSPDDG DGFSTAKEAQ NLAAKAAFER LSALPPPPPP QSETQLPYKS QLQVYAQKRH
101: KELPSYDTIQ SGPPHAPLFR STVTIDGRKF ESPQDYHTTK EAEFAAARVA LMSLCQEANP SEQMPVGSAS CISLPGIQIN HKLQLQMYAQ KRGKQLPWYD
201: RIQEGPSHAP QFKSIVTIDG QTFESPQYCH TIKEAEYAAA NLALVSLAQE VSSEEQLLVQ GMQYTNPRHE LAEKEGSSLP VCNTSSDNLK NSSISKSTVH
301: TQGESFQEGP GNTKKQKQMM VAAFQPSKDI GSQMQQGTET LTEQEVKTVE SDSSFPQVSM GTSDGQNDSN ATEHDSCSVG SRIDLPVADK TQSLDEPIKS
401: GSMENVKPAA PEPSIKAEVI DLRQECRSPP LVSVPPTDML NLVATTSTVP VALQSPVETI QPVKMENDKP AIPEPSTEAE VMDVADPSAE AEVDVPEPSI
501: KAEGMDVAEP SAEAEVDVPE PSIKDEVMNS TPEHTSLPLG SMPPTNTSNL AAKATAVPVD SAQCSYSMST NRIQIYPCRP DLKLPEGATV LPFSDGKWVA
601: VSLPLP
101: KELPSYDTIQ SGPPHAPLFR STVTIDGRKF ESPQDYHTTK EAEFAAARVA LMSLCQEANP SEQMPVGSAS CISLPGIQIN HKLQLQMYAQ KRGKQLPWYD
201: RIQEGPSHAP QFKSIVTIDG QTFESPQYCH TIKEAEYAAA NLALVSLAQE VSSEEQLLVQ GMQYTNPRHE LAEKEGSSLP VCNTSSDNLK NSSISKSTVH
301: TQGESFQEGP GNTKKQKQMM VAAFQPSKDI GSQMQQGTET LTEQEVKTVE SDSSFPQVSM GTSDGQNDSN ATEHDSCSVG SRIDLPVADK TQSLDEPIKS
401: GSMENVKPAA PEPSIKAEVI DLRQECRSPP LVSVPPTDML NLVATTSTVP VALQSPVETI QPVKMENDKP AIPEPSTEAE VMDVADPSAE AEVDVPEPSI
501: KAEGMDVAEP SAEAEVDVPE PSIKDEVMNS TPEHTSLPLG SMPPTNTSNL AAKATAVPVD SAQCSYSMST NRIQIYPCRP DLKLPEGATV LPFSDGKWVA
601: VSLPLP
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.