Factsheet for TraesCS3D01G307700.5

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G295400.2
TraesCS3A01G527500.1
TraesCS3B01G341600.1
TraesCS3B01G341700.4
TraesCS3B01G341800.9
TraesCS3D01G307700.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	TraesCS3A01G295400.2	AT3G62800.1	21798944
AT3G62800.1	TraesCS3A01G527500.1	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341600.1	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341700.4	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341800.9	AT3G62800.1	21798944
AT3G62800.1	TraesCS3D01G307700.5	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G295400.2	Wheat	nucleus	95.87	95.72
TraesCS3B01G341700.4	Wheat	mitochondrion, nucleus	95.38	95.38
TraesCS3B01G341800.9	Wheat	mitochondrion, nucleus	95.05	95.05
TraesCS3B01G341600.1	Wheat	mitochondrion, nucleus	84.65	94.13
HORVU3Hr1G075340.1	Barley	mitochondrion	82.84	87.92
Zm00001d022648_P001	Maize	mitochondrion, nucleus	19.8	48.78
Os01t0772000-01	Rice	mitochondrion, nucleus	35.31	48.53
KXG33474	Sorghum	mitochondrion	37.46	45.04
VIT_08s0056g01550.t01	Wine grape	plastid	10.73	39.16
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	13.86	29.17
Bra007702.1-P	Field mustard	nucleus	14.52	26.67
CDY11449	Canola	nucleus	14.36	26.28
CDX76663	Canola	cytosol	14.52	26.27
AT3G62800.1	Thale cress	nucleus	14.52	24.79
KRH57881	Soybean	nucleus	20.46	24.6
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	13.37	20.05
TraesCS6D01G161700.2	Wheat	nucleus	8.25	16.56
TraesCS1D01G099700.1	Wheat	nucleus	14.36	15.24
TraesCS4D01G132400.1	Wheat	cytosol	10.07	14.95
TraesCS1D01G155300.1	Wheat	nucleus	12.38	14.1
TraesCS5D01G143500.2	Wheat	nucleus	11.22	12.88

Protein Annotations

EnsemblPlants:TraesCS3D01G307700.5	EnsemblPlantsGene:TraesCS3D01G307700	Gene3D:3.30.160.20	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910
PANTHER:PTHR10910:SF114	PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
TIGR:cd00048	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:421370740..421376852

Molecular Weight (calculated)

65923.1 Da

IEP (calculated)

4.633

GRAVY (calculated)

-0.572

Length

606 amino acids

Sequence
(BLAST)

001: MFKAQLNQLC QQRRWPAPDY THRSEGPAHS LRFRATVAVN GEVYHSPDEG DGFSTAKEAQ NLAAKAAFER LSALPPPPPP QSETQLPYKS QLQVYAQKRH
101: KDLPSYDTVR SGPPHAPLFR STVTMDGRKF ESPQDYHTTK EAEFAAARVA LMSLCQEANP SEQMPAGSAS CISLPGIQIN HKLQLQMYAQ KRGKQLPWYD
201: RIQEGPSHAP LFKSIVTIDG QTFESPRYCH TIKEAEYAAA NLALVSLAQE VSSEEQLPVQ GMQYTNPRHE LAEKEGSSLP IYNTSSDNLE NSSISKSTVH
301: TQGESFQEGP GNTKKQKQMI VAAFQPSKDI GSQMQQGTET LTEQEVKTVE SDSSFPQVSM GTSDGQNDSN AIEHDSCSVG SRIDLPVADK TQSLDEPIQS
401: GSMENVKQAA PEPSIKAEVM DLTQECRSPP LVSVPPTDML NLVATTSTVP VALQSRVETI QPVKMENDKP AIPEPSTEAE VMDVAEPSAE AEVDVPEPSI
501: KAEGMDVAEP SAEAEVDVPE PSIKAEVTNS TPEHTSLPLG SMPPTNTSNL VAKATAVPVD SARCGYSMST NRVQIYPCRP DLKLPEGATV LPFSDDKWVA
601: VSLPFP

Best Arabidopsis Sequence Match ( AT3G62800.1 )
(BLAST)

001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP

Arabidopsis Description

DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.