Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G148100.2 | Wheat | nucleus | 96.02 | 95.66 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 95.83 | 91.01 |
| HORVU5Hr1G047100.5 | Barley | nucleus | 87.88 | 80.98 |
| Os11t0109900-01 | Rice | cytosol | 52.08 | 58.14 |
| Os05t0307400-01 | Rice | cytosol | 47.92 | 57.89 |
| OQU82704 | Sorghum | cytosol, nucleus | 35.8 | 57.45 |
| TraesCS4D01G132400.1 | Wheat | cytosol | 40.72 | 52.7 |
| KXG22802 | Sorghum | mitochondrion | 42.8 | 52.31 |
| Zm00001d005065_P002 | Maize | cytosol | 42.61 | 51.84 |
| Bra019999.1-P | Field mustard | plastid | 23.86 | 45.99 |
| CDY20678 | Canola | cytosol | 23.67 | 45.13 |
| CDX93488 | Canola | plastid | 23.48 | 45.09 |
| Bra030793.1-P | Field mustard | cytosol | 23.48 | 44.6 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 22.73 | 42.4 |
| GSMUA_Achr11P... | Banana | nucleus | 29.73 | 41.98 |
| KRH52961 | Soybean | nucleus | 26.89 | 39.12 |
| KRH62246 | Soybean | nucleus | 26.52 | 39.0 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 23.67 | 38.94 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 28.79 | 38.0 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 24.43 | 35.83 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 25.76 | 33.5 |
| AT1G09700.1 | Thale cress | plastid | 25.38 | 31.98 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 25.38 | 30.95 |
| TraesCS6D01G161700.2 | Wheat | nucleus | 11.55 | 20.2 |
| Os12t0109900-02 | Rice | cytosol | 17.23 | 19.7 |
| TraesCS5D01G297600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 12.69 | 16.58 |
| TraesCS1D01G099700.1 | Wheat | nucleus | 15.53 | 14.36 |
| TraesCS1D01G155300.1 | Wheat | nucleus | 13.64 | 13.53 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 12.88 | 11.22 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G143500.2 | EnsemblPlantsGene:TraesCS5D01G143500 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003725 | GO:GO:0005488 | InterPro:DRB | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR11207 |
| PANTHER:PTHR11207:SF1 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:16.10.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:229186861..229189626
Molecular Weight (calculated)
57073.7 Da
IEP (calculated)
4.676
GRAVY (calculated)
-0.713
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGAGMATPP EANTSPAPNG GGCGGIRVEN CYVFKSRLQE YAQKAGLMTP EYQTLKEGPS HEPIFKSSVV INNVKYDSLP GFFSRKAAEQ SAAEVALMEI
101: GKSVALPTNA TIPAVQETGL CKNLLQEYAQ KMNYAIPSYI CNKQGPYICT VEIGGIQYIG ATARTKKEAE IKAARTALLA IQVAGQSEGC ANGTTKYIVV
201: PGKRQAKEIE KKPVETPKSL KTKKGGFKKQ RNKNKFIKKN GQVNEEKDET GVPGDAHHSD VPMKPAVTTE DPLTNTEMIQ PDEAWPIEHE PTGDTAMLQP
301: DEDAWPSKHE PTGDTAMLQP DGEATKVEQE QLSDTAMLQP DDEGGRVEHE QLSNAPMVLH NEEARNVKQE ALIGTAMPQP HVEDRRVGAE PPRDAAMVQS
401: NDEARCVKQE LLIDAAMPLP NEEAGAAANP VPLSDSITTQ PNAETTNINE SLRNAASVQH NEEARTVNQE PPSSASLLQL KEPRVENGEF VSENKGQTLG
501: DASREANRSN EDVPEKCSDN SSAVTSVE
101: GKSVALPTNA TIPAVQETGL CKNLLQEYAQ KMNYAIPSYI CNKQGPYICT VEIGGIQYIG ATARTKKEAE IKAARTALLA IQVAGQSEGC ANGTTKYIVV
201: PGKRQAKEIE KKPVETPKSL KTKKGGFKKQ RNKNKFIKKN GQVNEEKDET GVPGDAHHSD VPMKPAVTTE DPLTNTEMIQ PDEAWPIEHE PTGDTAMLQP
301: DEDAWPSKHE PTGDTAMLQP DGEATKVEQE QLSDTAMLQP DDEGGRVEHE QLSNAPMVLH NEEARNVKQE ALIGTAMPQP HVEDRRVGAE PPRDAAMVQS
401: NDEARCVKQE LLIDAAMPLP NEEAGAAANP VPLSDSITTQ PNAETTNINE SLRNAASVQH NEEARTVNQE PPSSASLLQL KEPRVENGEF VSENKGQTLG
501: DASREANRSN EDVPEKCSDN SSAVTSVE
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.