Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G174000.1 | Wheat | nucleus | 96.8 | 97.72 |
| TraesCS1A01G157700.3 | Wheat | nucleus | 96.05 | 97.15 |
| HORVU1Hr1G041820.1 | Barley | nucleus | 92.67 | 93.55 |
| KRH55141 | Soybean | cytosol, mitochondrion, nucleus, plastid | 21.8 | 74.84 |
| Os10t0480500-01 | Rice | cytosol, nucleus, plastid | 71.05 | 73.54 |
| Zm00001d032679_P001 | Maize | nucleus | 69.36 | 71.65 |
| KXG38314 | Sorghum | mitochondrion, nucleus | 71.62 | 70.56 |
| Zm00001d014011_P001 | Maize | mitochondrion, nucleus, plastid | 68.8 | 70.38 |
| KRG90046 | Soybean | nucleus | 11.84 | 70.0 |
| KRH58007 | Soybean | nucleus | 11.09 | 65.56 |
| KRH25014 | Soybean | cytosol, nucleus, plastid | 43.05 | 57.11 |
| VIT_06s0004g02810.t01 | Wine grape | cytosol, nucleus, plastid | 43.98 | 56.66 |
| KRH29911 | Soybean | cytosol, nucleus, plastid | 43.23 | 55.96 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 46.62 | 54.99 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, nucleus, plastid | 45.68 | 54.85 |
| PGSC0003DMT400020800 | Potato | nucleus | 41.73 | 54.28 |
| CDY04559 | Canola | cytosol, mitochondrion, nucleus, plastid | 43.8 | 54.19 |
| Solyc11g069460.1.1 | Tomato | nucleus | 42.11 | 54.11 |
| Bra011953.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 43.61 | 53.95 |
| Bra035704.1-P | Field mustard | nucleus | 43.42 | 53.35 |
| KRH22885 | Soybean | cytosol, mitochondrion, nucleus, plastid | 39.29 | 53.18 |
| CDX77176 | Canola | cytosol, mitochondrion, nucleus, plastid | 43.23 | 53.12 |
| CDY30490 | Canola | nucleus | 43.23 | 53.0 |
| KRH26403 | Soybean | cytosol, mitochondrion, nucleus, plastid | 40.79 | 52.8 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, nucleus, plastid | 46.62 | 52.77 |
| CDY15737 | Canola | cytosol | 42.67 | 52.42 |
| AT2G28380.1 | Thale cress | cytosol | 42.29 | 51.84 |
| PGSC0003DMT400060309 | Potato | cytosol, nucleus, plastid | 40.79 | 42.89 |
| Solyc05g056100.2.1 | Tomato | cytosol, nucleus, plastid | 41.17 | 39.6 |
| TraesCS5D01G297600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 27.82 | 36.63 |
| TraesCS1D01G099700.1 | Wheat | nucleus | 29.7 | 27.67 |
| TraesCS6D01G161700.2 | Wheat | nucleus | 11.09 | 19.54 |
| TraesCS4D01G132400.1 | Wheat | cytosol | 13.91 | 18.14 |
| TraesCS5D01G143500.2 | Wheat | nucleus | 13.53 | 13.64 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 14.1 | 12.38 |
Protein Annotations
| Gene3D:3.30.160.20 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003725 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0035196 | GO:GO:0040029 | GO:GO:0070919 | InterPro:IPR014720 | PFAM:PF00035 |
| PFscan:PS50137 | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF141 | SMART:SM00358 | SUPFAM:SSF54768 | EnsemblPlantsGene:TraesCS1D01G155300 |
| EnsemblPlants:TraesCS1D01G155300.1 | TIGR:cd00048 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:-:217978183..217983254
Molecular Weight (calculated)
57127.6 Da
IEP (calculated)
8.808
GRAVY (calculated)
-0.488
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKNQLQELA QRSCFNLPAY TCLREGPDHA PRFKAAVIFN GEQFESPGFF TTLRQAEHAA AEVALAALAR RGPSYSLAAR ILDETGVYKN LLQEVAQRVG
101: APLPSYTTER SGLGHLPVFT CTVELAGITF TGDHAKNKKQ AEKNAASAAW ASLKQLAREE ANTTNEPENN DEQEQIRIAR ALLNYRTKEK IAMANNPNAS
201: PFPKKFPMQP ERKPCFGQSS QSSYSKILPL FRPKSSSRSR PESPAAADGA SQSPFWPIES SNSRSRFPAA EAAPYVPVGH YRMPCHSMAP PVTVRSSIPV
301: FSAPPLPPPS GRTTQQLPPL LSNPPSVRMA SPVRIRPASP HFAPSGPAQR PRPVMSVQMK DVQHKAIRES MSSAIPVQVK DAQQRPTKES PSSAMPVQVK
401: DGQHQLFKGS MSSSVMPIQM KDVQPQPAKE PLSEGKDAPP AATGPLVKIE APAQVKEASE VVTSEVVPCP AAGSVAAAAS STSTSTSECS TAAPASQSGA
501: DDDAAKGEEA REDVLETEAA LEEGIIKLLE IK
101: APLPSYTTER SGLGHLPVFT CTVELAGITF TGDHAKNKKQ AEKNAASAAW ASLKQLAREE ANTTNEPENN DEQEQIRIAR ALLNYRTKEK IAMANNPNAS
201: PFPKKFPMQP ERKPCFGQSS QSSYSKILPL FRPKSSSRSR PESPAAADGA SQSPFWPIES SNSRSRFPAA EAAPYVPVGH YRMPCHSMAP PVTVRSSIPV
301: FSAPPLPPPS GRTTQQLPPL LSNPPSVRMA SPVRIRPASP HFAPSGPAQR PRPVMSVQMK DVQHKAIRES MSSAIPVQVK DAQQRPTKES PSSAMPVQVK
401: DGQHQLFKGS MSSSVMPIQM KDVQPQPAKE PLSEGKDAPP AATGPLVKIE APAQVKEASE VVTSEVVPCP AAGSVAAAAS STSTSTSECS TAAPASQSGA
501: DDDAAKGEEA REDVLETEAA LEEGIIKLLE IK
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI
Arabidopsis Description
DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.