CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	KRG89812	AT2G41090.1	17360592
AT2G28380.1	KRG94975	AT2G41090.1	17360592
AT2G28380.1	KRH18664	AT2G41090.1	17360592
AT2G28380.1	KRG89812	AT2G41100.1	17360592
AT2G28380.1	KRG94975	AT2G41100.1	17360592
AT2G28380.1	KRH18664	AT2G41100.1	17360592
AT2G28380.1	KRH31638	AT4G14640.1	17360592
AT2G28380.1	KRH69070	AT4G14640.1	17360592
AT2G28380.1	KRG89812	AT5G21274.1	17360592
AT2G28380.1	KRG94975	AT5G21274.1	17360592
AT2G28380.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29911	Soybean	cytosol, nucleus, plastid	94.51	92.21
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	32.92	85.16
KRG90046	Soybean	nucleus	17.96	80.0
KRH58007	Soybean	nucleus	17.46	77.78
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	75.81	73.97
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	71.82	73.28
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	72.07	69.98
AT2G28380.1	Thale cress	cytosol	67.58	62.44
Bra035704.1-P	Field mustard	nucleus	66.58	61.66
PGSC0003DMT400020800	Potato	nucleus	62.84	61.61
CDY30490	Canola	nucleus	66.33	61.29
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	66.08	61.2
Solyc11g069460.1.1	Tomato	nucleus	62.84	60.87
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	64.09	59.77
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.84	59.53
CDY15737	Canola	cytosol	63.84	59.12
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	61.85	54.99
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	60.6	54.85
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	62.59	53.4
Os10t0480500-01	Rice	cytosol, nucleus, plastid	56.36	43.97
Zm00001d032679_P001	Maize	nucleus	56.36	43.88
TraesCS1B01G174000.1	Wheat	nucleus	56.86	43.26
TraesCS1A01G157700.3	Wheat	nucleus	56.61	43.16
HORVU1Hr1G041820.1	Barley	nucleus	56.61	43.07
TraesCS1D01G155300.1	Wheat	nucleus	57.11	43.05
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	55.36	42.69
KXG38314	Sorghum	mitochondrion, nucleus	56.36	41.85
KRH68665	Soybean	nucleus	42.89	31.91
KRG96921	Soybean	nucleus	41.65	31.04
KRH63090	Soybean	nucleus	10.72	27.56
KRH62980	Soybean	nucleus	11.72	23.62
KRH46125	Soybean	mitochondrion, nucleus	16.71	19.03
KRG98822	Soybean	nucleus	12.22	18.08
KRH52961	Soybean	nucleus	15.96	17.63
KRH62246	Soybean	nucleus	15.71	17.55
KRH57881	Soybean	nucleus	21.45	17.06
KRH15123	Soybean	nucleus	17.46	15.25
KRH01275	Soybean	nucleus	12.22	14.67
KRH30959	Soybean	mitochondrion	9.98	14.49
KRH73012	Soybean	nucleus	10.47	14.38

Protein Annotations

EntrezGene:100812728	Gene3D:3.30.160.20	MapMan:35.1	EMBL:ACUP02007196	EMBL:BT097697	UniProt:C6TJ54
EnsemblPlantsGene:GLYMA_12G075700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720
EnsemblPlants:KRH25014	ProteinID:KRH25014	ProteinID:KRH25014.1	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910
PANTHER:PTHR10910:SF141	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0001B16F55	InterPro:dsRBD_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:5794863..5798468

Molecular Weight (calculated)

43660.6 Da

IEP (calculated)

10.222

GRAVY (calculated)

-0.443

Length

401 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPHYC STLRQAEHSA AEVALNSLSN RAPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPQYFTFR SGLGHLPVFT GTVELAGIMF TGEPAKNKKQ AEKNAAMAAW SSLKQLAKET ARSSTEPENN DELEQITIAR ALLNYRLKEK ISMSNSNAPV
201: PFPKKFQIQN PRPTSPQPPP AATSKILPLI CQKAAPRSRH LVGASPARAS CDNSAMPQLS ATPESRGIRR PKFPAAGAAP YVPIRQMRPC QGMAPPVTIR
301: TAIPVFSPPP AAAAVSHQVL RAPHVRVAPP VTIRQAVPVF ATPPPPIRKD EPVPIPKDEP PTISAPSPED KLPAKTPEAE TKTENIPPKP DMVKSLEQLK
401: I

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.