Factsheet for Bra035704.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
vacuole 1
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	Bra000214.1-P	AT2G41090.1	17360592
AT2G28380.1	Bra000214.1-P	AT2G41100.1	17360592
AT2G28380.1	Bra018296.1-P	AT3G51920.1	17360592
AT2G28380.1	Bra033467.1-P	AT3G51920.1	17360592
AT2G28380.1	Bra039723.1-P	AT4G14640.1	17360592
AT2G28380.1	Bra002368.1-P	AT5G21274.1	17360592
AT2G28380.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30490	Canola	nucleus	98.61	98.39
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	98.15	98.15
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	82.68	83.26
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	29.33	81.94
KRG90046	Soybean	nucleus	16.17	77.78
AT2G28380.1	Thale cress	cytosol	76.91	76.73
KRH58007	Soybean	nucleus	15.24	73.33
KRH25014	Soybean	cytosol, nucleus, plastid	61.66	66.58
KRH29911	Soybean	cytosol, nucleus, plastid	62.59	65.94
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	60.05	62.95
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	58.2	61.31
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	55.2	60.81
PGSC0003DMT400020800	Potato	nucleus	56.35	59.66
Solyc11g069460.1.1	Tomato	nucleus	55.89	58.45
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	54.97	52.77
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	53.81	52.6
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	54.27	50.0
Os10t0480500-01	Rice	cytosol, nucleus, plastid	52.66	44.36
Zm00001d032679_P001	Maize	nucleus	52.42	44.08
HORVU1Hr1G041820.1	Barley	nucleus	53.12	43.64
TraesCS1B01G174000.1	Wheat	nucleus	53.12	43.64
TraesCS1A01G157700.3	Wheat	nucleus	52.89	43.54
TraesCS1D01G155300.1	Wheat	nucleus	53.35	43.42
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	51.73	43.08
Bra025523.1-P	Field mustard	nucleus	35.33	41.92
KXG38314	Sorghum	mitochondrion, nucleus	52.19	41.85
Bra039103.1-P	Field mustard	nucleus	33.72	41.6
Bra032962.1-P	Field mustard	nucleus	34.41	39.95
Bra007702.1-P	Field mustard	nucleus	21.71	28.48
Bra019999.1-P	Field mustard	plastid	17.32	27.37
Bra030793.1-P	Field mustard	cytosol	15.94	24.82

Protein Annotations

EnsemblPlants:Bra035704.1	EnsemblPlants:Bra035704.1-P	EnsemblPlantsGene:Bra035704	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141
PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000189D765
UniProt:M4F3Q4	MapMan:35.1	:	:	:	:

Description

AT2G28380 (E=6e-163) DRB2 | DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding

Coordinates

chrA04:-:12678102..12679586

Molecular Weight (calculated)

47271.4 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.436

Length

433 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFGLPSY TCLREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALGALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SNSMPESENS DELEQVIIAR ALINYRIKEN IGSGSSSSAP
201: VPFAKKFFMQ SLRPTSPQPS HATTSRILPF ICPKPSSRTS RSVSAASVER AIAAALENRN YRPPQQRFAA ATPGAAAAPP YVPMRHMRSP CNGMAPPVTI
301: RNSVPVFSAP PPTCANTQQQ QRPSVYVPSM MRTAAPVRIA PPVTIRTAVP VFASAPPQIR KEEALPVRKV NVQTSVKPVV QEREERALSL PDNLEIELEA
401: SAKPVSETDR AALKDSKGEH ETVKERLENL KIW

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.