Factsheet for Bra039103.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12250	Canola	nucleus	98.01	98.01
CDY00177	Canola	nucleus	94.87	94.6
Bra032962.1-P	Field mustard	nucleus	82.62	77.75
AT3G26932.2	Thale cress	nucleus	74.36	72.7
Bra025523.1-P	Field mustard	nucleus	55.84	53.7
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	43.3	42.94
TraesCS5A01G290100.2	Wheat	nucleus	43.02	41.6
TraesCS5B01G289100.1	Wheat	nucleus	42.73	40.98
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	43.59	37.87
VIT_14s0068g01520.t01	Wine grape	nucleus	50.14	36.59
Os09t0508500-02	Rice	nucleus	39.32	34.16
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.6	33.95
Bra035704.1-P	Field mustard	nucleus	41.6	33.72
Bra007702.1-P	Field mustard	nucleus	24.22	25.76
Bra019999.1-P	Field mustard	plastid	19.09	24.45
Bra030793.1-P	Field mustard	cytosol	17.66	22.3

Protein Annotations

EnsemblPlants:Bra039103.1	EnsemblPlants:Bra039103.1-P	EnsemblPlantsGene:Bra039103	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF115
PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0002541B20
UniProt:M4FDD2	MapMan:35.1	:	:	:	:

Description

AT3G26932 (E=7e-095) DRB3 | DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding

Coordinates

chrA09:-:1150519..1151742

Molecular Weight (calculated)

39045.9 Da

IEP (calculated)

10.311

GRAVY (calculated)

-0.529

Length

351 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCTREGPDHA PRFKACVNFN SEMFESPTYC STLRQAEHSA AEVALIALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF IGESAKTKKQ AEKNAAIAAW FSLRRMPSLD SLVEKRGEGE KEREVVARVL SRFRPKEVRR REQHHSRRRA
201: IRQETTTTRE FLSEKLRLIN PYTNVPSSSS LKHHQTLPSR LNLQQQQSKV KSLLEKSQGH AGIISSSSME RTNCYSKLLP FPEMFAGGRG FQKLAPAVHI
301: RSVIPVCSAP PPKLSPSSAP SSLGSGDQEK KPLRLESNPC IKIVSLDQPM L

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.