Factsheet for Bra032962.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34199	Canola	nucleus	100.0	100.0
CDY28511	Canola	nucleus	94.37	93.37
Bra039103.1-P	Field mustard	nucleus	77.75	82.62
AT3G26932.2	Thale cress	nucleus	75.34	78.27
Bra025523.1-P	Field mustard	nucleus	53.62	54.79
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	40.75	42.94
TraesCS5A01G290100.2	Wheat	nucleus	40.75	41.87
TraesCS5B01G289100.1	Wheat	nucleus	40.48	41.26
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	41.02	37.87
VIT_14s0068g01520.t01	Wine grape	nucleus	47.19	36.59
Os09t0508500-02	Rice	nucleus	37.53	34.65
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	39.95	34.65
Bra035704.1-P	Field mustard	nucleus	39.95	34.41
Bra007702.1-P	Field mustard	nucleus	23.59	26.67
Bra019999.1-P	Field mustard	plastid	17.69	24.09
Bra030793.1-P	Field mustard	cytosol	16.62	22.3

Protein Annotations

EnsemblPlants:Bra032962.1	EnsemblPlants:Bra032962.1-P	EnsemblPlantsGene:Bra032962	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF115
PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00025457D0
UniProt:M4EVX9	MapMan:35.1	:	:	:	:

Description

AT3G26932 (E=8e-129) DRB3 | DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding

Coordinates

chrA02:+:22234156..22235441

Molecular Weight (calculated)

41725.7 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.715

Length

373 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKACVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHVPTFS CTVELAGMRF NGESAKTKKQ AEKNAAIAAW FSLRKMPTSL DSQRGEEKER EVVARVLSRF RPKEGRRREQ HHSRRRAIRH
201: DTRDMLCEKL RMINPYTNEA SPSSLKHHQT LLPPRLWPST TNLQQQSKVK SLLEKSQEQA GLKQRSPDDA KPEMIIKSFP LSSMERRNCY SKLLPFPEMF
301: AGGFGLNHQK LAPSVHMRSV IPVCSAPPPK PLSPFNGSNT SSCSAPSSLG TEGQEKKSLM ELELESKSDR THD

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.