Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G290100.2 | Wheat | nucleus | 87.13 | 96.97 |
| TraesCS5B01G289100.1 | Wheat | nucleus | 86.63 | 95.63 |
| Zm00001d006103_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 62.38 | 71.19 |
| Bra039103.1-P | Field mustard | nucleus | 37.87 | 43.59 |
| CDY12250 | Canola | nucleus | 37.62 | 43.3 |
| CDY00177 | Canola | nucleus | 37.62 | 43.18 |
| AT3G26932.2 | Thale cress | nucleus | 38.37 | 43.18 |
| Os09t0508500-02 | Rice | nucleus | 43.07 | 43.07 |
| CDY28511 | Canola | nucleus | 38.61 | 41.38 |
| CDY48959 | Canola | nucleus | 37.13 | 41.1 |
| Bra025523.1-P | Field mustard | nucleus | 37.13 | 41.1 |
| CDY34199 | Canola | nucleus | 37.87 | 41.02 |
| Bra032962.1-P | Field mustard | nucleus | 37.87 | 41.02 |
| CDY46403 | Canola | nucleus | 36.14 | 38.73 |
| AT5G41070.1 | Thale cress | nucleus | 36.88 | 37.91 |
| VIT_14s0068g01520.t01 | Wine grape | nucleus | 42.33 | 35.55 |
| TraesCS1D01G155300.1 | Wheat | nucleus | 36.63 | 27.82 |
| TraesCS1D01G099700.1 | Wheat | nucleus | 38.61 | 27.32 |
| TraesCS6D01G161700.2 | Wheat | nucleus | 13.86 | 18.54 |
| TraesCS4D01G132400.1 | Wheat | cytosol | 16.34 | 16.18 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 20.05 | 13.37 |
| TraesCS5D01G143500.2 | Wheat | nucleus | 16.58 | 12.69 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G297600.2 | EnsemblPlantsGene:TraesCS5D01G297600 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF115 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:394827238..394828784
Molecular Weight (calculated)
43618.9 Da
IEP (calculated)
8.780
GRAVY (calculated)
-0.349
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKNQLQELA QRSCFSLPSY VCTREGPDHA PRFKATVTFN GETFHGPTCC TTLRQAEHAA AEVALARLST RGPSTYLTAR VLVSCFFSSS SMRLLALHVS
101: LMMPVGYSKL NCVGWCVVDA NGVQDETGVY KNLLQETAHR AGLKLPVYTT VRSGPGHSPV FASSVELAGL SFFGDAARTK KQAEKNAAMT AWSALKQMPE
201: ARKEPGNGCG GEEQEHVVVA RVLAALKQRC DGNAASPLPK QHCVAGSSSS APNPSLYRHQ WLPLSSHAAH PRTRHVQPQP QPAGPRILPP LHMLQRPAPS
301: TSRHGGELER QRRIDAAELV QMLERAMVTN REEAMPSAPC YYPHVPAYHH AGAAPRYFAA GGFHSPAMAV SVRSVIPVCS APPQPAAATK DDDDRSDPAA
401: PAEH
101: LMMPVGYSKL NCVGWCVVDA NGVQDETGVY KNLLQETAHR AGLKLPVYTT VRSGPGHSPV FASSVELAGL SFFGDAARTK KQAEKNAAMT AWSALKQMPE
201: ARKEPGNGCG GEEQEHVVVA RVLAALKQRC DGNAASPLPK QHCVAGSSSS APNPSLYRHQ WLPLSSHAAH PRTRHVQPQP QPAGPRILPP LHMLQRPAPS
301: TSRHGGELER QRRIDAAELV QMLERAMVTN REEAMPSAPC YYPHVPAYHH AGAAPRYFAA GGFHSPAMAV SVRSVIPVCS APPQPAAATK DDDDRSDPAA
401: PAEH
001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
Arabidopsis Description
DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.