Factsheet for TraesCS7D01G502800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G313300.1
TraesCS2A01G504600.1
TraesCS2B01G332100.1
TraesCS2D01G311800.1
TraesCS2D01G505300.1
TraesCS6A01G198600.1
TraesCS6A01G306500.1
TraesCS6B01G230000.1
TraesCS6B01G334900.1
TraesCS6D01G184500.2
TraesCS6D01G285600.1
TraesCS7A01G512700.1
TraesCS7A01G513400.1
TraesCS7A01G513500.1
TraesCS7B01G091900.1
TraesCS7B01G428200.1
TraesCS7B01G430900.2
TraesCS7D01G187600.1
TraesCS7D01G398600.2
TraesCS7D01G502800.1
TraesCS7D01G504300.3
TraesCSU01G086900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	TraesCS2A01G313300.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS2B01G332100.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS2D01G311800.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS6A01G198600.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS6B01G230000.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS6D01G184500.2	AT1G54060.1	21798944
AT3G20420.1	TraesCS2A01G504600.1	AT1G71230.1	21798944
AT3G20420.1	TraesCS2D01G505300.1	AT1G71230.1	21798944
AT3G20420.1	TraesCS7A01G512700.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7A01G513400.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7A01G513500.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7B01G428200.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7B01G430900.2	AT3G20420.1	21798944
AT3G20420.1	TraesCS7D01G398600.2	AT3G20420.1	21798944
AT3G20420.1	TraesCS7D01G502800.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7D01G504300.3	AT3G20420.1	21798944
AT3G20420.1	TraesCSU01G086900.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G20420.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G20420.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G20420.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G20420.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	97.28	96.24
TraesCS7D01G504300.3	Wheat	mitochondrion	96.74	96.22
TraesCS7B01G430900.2	Wheat	mitochondrion	97.01	95.45
TraesCS7A01G513500.1	Wheat	nucleus	82.07	95.27
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	94.29	93.53
HORVU7Hr1G115000.1	Barley	nucleus	45.38	88.83
HORVU7Hr1G115100.2	Barley	plastid	90.76	81.86
Os05t0271300-00	Rice	cytosol, nucleus, plastid	69.29	80.44
Zm00001d009879_P002	Maize	plastid	78.53	76.86
KXG21693	Sorghum	plastid	76.09	63.35
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	53.53	57.77
VIT_19s0090g00940.t01	Wine grape	cytosol	46.2	50.45
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	54.62	49.39
Solyc10g006210.1.1	Tomato	cytosol	14.4	49.07
GSMUA_Achr2P15170_001	Banana	cytosol	45.11	48.82
PGSC0003DMT400033487	Potato	cytosol	45.65	45.78
KRH14361	Soybean	cytosol	42.39	45.22
CDY54644	Canola	cytosol	39.95	43.88
Bra035784.1-P	Field mustard	cytosol	39.95	43.88
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	44.84	42.2
PGSC0003DMT400037378	Potato	cytosol	32.61	40.54
CDY29825	Canola	plastid	39.95	39.2
AT3G20420.1	Thale cress	plastid	39.95	37.6
TraesCS7D01G344100.1	Wheat	cytosol	28.53	33.98
TraesCS7D01G344200.1	Wheat	cytosol	27.45	32.27
TraesCS2D01G479300.1	Wheat	plastid	24.46	26.01
AT5G45150.1	Thale cress	cytosol	29.08	11.18
TraesCS2D01G362700.1	Wheat	nucleus	30.16	6.83
TraesCS1D01G158000.2	Wheat	nucleus	27.99	6.33
TraesCS3D01G411200.6	Wheat	nucleus	27.45	6.18
TraesCS4D01G342300.1	Wheat	mitochondrion	32.88	5.98
TraesCS5D01G086900.1	Wheat	cytosol	20.92	5.5

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	PFAM:PF00636	PFAM:PF14709
ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom
InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	EnsemblPlantsGene:TraesCS7D01G502800
EnsemblPlants:TraesCS7D01G502800.1	TIGR:cd00048	TIGR:cd00593	InterPro:dsRBD_dom	SEG:seg	:

Description

No Description!

Coordinates

chr7D:-:608204255..608208748

Molecular Weight (calculated)

40536.1 Da

IEP (calculated)

9.123

GRAVY (calculated)

-0.160

Length

368 amino acids

Sequence
(BLAST)

001: MMKPGSRKRR ASPPAPSAPV TLPPPGFVAD REEAAARVER LLQYQFNKRS LLEEALTHQS FAAASYQRLE FVGDAALGLA FSNFLYLTNP TVGPGVLSTL
101: RAANISTEKL ARVAVRHDLY PLLRRNCPRL DLLVGQFIQS VKQELEDDLG TTPYGGTVFK APKVLADIVE AIAAAVYVDC NFNLEKLWKV TRFLFEPIVT
201: AETIDEQPVS TLHELCQKHG KDVKFKTWQK GGTVVVNVFV GGALVGMGSS EQMVIAKLNA TRDALSKLLG GGNQQVLTTG VGHGLGVEVG ELRECKQKLI
301: EQCSRKHWPK PIFKLEKEEG LAHDRTFVYS VQVETQGGIW VTLSDKMSRV KDAENSGAQK MLEHLLKL

Best Arabidopsis Sequence Match ( AT1G01040.1 )
(BLAST)

0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS

Arabidopsis Description

DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.