CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02487
CDY08216
CDY20269
CDY24170
CDY26148
CDY29825
CDY33093
CDY36943
CDY39688
CDY51405
CDY54644
CDY61477

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	CDY02487	AT1G54060.1	21798944
AT3G20420.1	CDY08216	AT1G54060.1	21798944
AT3G20420.1	CDY26148	AT1G54060.1	21798944
AT3G20420.1	CDY33093	AT1G54060.1	21798944
AT3G20420.1	CDY51405	AT1G54060.1	21798944
AT3G20420.1	CDY61477	AT1G54060.1	21798944
AT3G20420.1	CDY20269	AT2G24030.1	21798944
AT3G20420.1	CDY39688	AT2G24030.1	21798944
AT3G20420.1	CDY29825	AT3G20420.1	21798944
AT3G20420.1	CDY54644	AT3G20420.1	21798944
AT3G20420.1	CDY24170	AT3G47620.1	21798944
AT3G20420.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035784.1-P	Field mustard	cytosol	100.0	100.0
CDY29825	Canola	plastid	96.72	86.4
AT3G20420.1	Thale cress	plastid	76.12	65.22
VIT_19s0090g00940.t01	Wine grape	cytosol	53.43	53.12
KRH14361	Soybean	cytosol	53.13	51.59
PGSC0003DMT400033487	Potato	cytosol	50.15	45.78
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	44.78	43.99
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	49.55	42.46
GSMUA_Achr2P15170_001	Banana	cytosol	42.99	42.35
Os05t0271300-00	Rice	cytosol, nucleus, plastid	39.1	41.32
TraesCS7A01G513500.1	Wheat	nucleus	38.81	41.01
TraesCS7A01G512700.1	Wheat	mitochondrion	43.88	40.5
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	44.48	40.05
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	43.88	39.95
TraesCS7D01G504300.3	Wheat	mitochondrion	43.88	39.73
TraesCS7B01G428200.1	Wheat	mitochondrion	43.28	39.73
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	43.88	39.62
TraesCS7B01G430900.2	Wheat	mitochondrion	44.18	39.57
Zm00001d009879_P002	Maize	plastid	43.88	39.1
TraesCSU01G086900.1	Wheat	mitochondrion	42.39	38.27
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	45.97	37.84
HORVU7Hr1G115000.1	Barley	nucleus	20.3	36.17
HORVU7Hr1G115100.2	Barley	plastid	42.69	35.05
CDX90592	Canola	cytosol, nucleus, peroxisome	28.36	33.45
CDY09765	Canola	cytosol, nucleus, peroxisome	28.36	33.45
KXG21693	Sorghum	plastid	43.88	33.26
CDY22924	Canola	cytosol	27.46	32.51
CDY48286	Canola	cytosol	27.16	32.16
Os01t0551100-01	Rice	cytosol	24.18	31.64
CDY30942	Canola	nucleus	28.06	7.45
CDY21223	Canola	nucleus	28.36	6.21
CDY15207	Canola	nucleus	32.54	6.03
CDX90002	Canola	nucleus	32.24	5.96
CDY50692	Canola	nucleus	22.09	5.33
CDX92469	Canola	nucleus, plastid	25.97	5.3
CDY35811	Canola	nucleus	25.67	5.24
CDY43132	Canola	cytosol, nucleus, plastid	21.49	5.19
CDY50691	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	GO:A0A078IZN2	UniProt:A0A078IZN2	EnsemblPlants:CDY54644
ProteinID:CDY54644	ProteinID:CDY54644.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	GO:GO:0090502	EnsemblPlantsGene:GSBRNA2T00014449001
InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	PFAM:PF00035	PFAM:PF00636	PFAM:PF14709
ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom
InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI0002547B01
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

BnaA05g36100DBnaA05g36100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZN2]

Coordinates

chrLK033339:-:12503..14147

Molecular Weight (calculated)

37933.5 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.303

Length

335 amino acids

Sequence
(BLAST)

001: MESLQAVEKI VNYSFANKSL LEEALTHTSC VDFPSYERLE FVGDSAVGLA LTNYLYLTYP NAEPHELSQL RAANVSTEKF ARVALKHGLY RFLRRNAPSL
101: DEKVTEFSEA VCKEDDSVYY GGLVKAPKVL ADLLESVAGA VYIDVNFDLQ RFWVIFRGLL EPIFTLDDLQ QQPQPISMLF QLCHKHNKRL AIRYLKEGKR
201: IIAGVYLDDQ LFASGSAENK DTAKLLAAKE ALGKFSECTP IAMVIDEGSV EVEVEDAKRK LYEICSKKKW PKPIYSVEEE RGSANEKRFV CSARIKIPSE
301: ESPLYMKGDE ESKKKKAENS SAYHMIIALR KSNYL

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.