Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24030.1 | CDY20269 | AT2G24030.1 | 21798944 |
| AT2G24030.1 | CDY39688 | AT2G24030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39688 | Canola | nucleus | 92.9 | 95.77 |
| AT2G24030.1 | Thale cress | nucleus | 56.56 | 45.49 |
Protein Annotations
| EnsemblPlants:CDY20269 | EnsemblPlantsGene:GSBRNA2T00012175001 | Gene3D:3.30.160.60 | GO:A0A078G4F1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0008270 | GO:GO:0046872 | InterPro:Matrin/U1-like-C_Znf_C2H2 | InterPro:Znf_C2H2_sf | PANTHER:PTHR23067 |
| PANTHER:PTHR23067:SF43 | PFAM:PF12874 | ProteinID:CDY20269 | ProteinID:CDY20269.1 | SEG:seg | SMART:SM00451 |
| SUPFAM:SSF57667 | UniParc:UPI0004EE2C59 | UniProt:A0A078G4F1 | MapMan:35.2 | : | : |
Description
BnaC04g36870DBnaC04g36870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4F1]
Coordinates
chrLK032105:-:153593..155309
Molecular Weight (calculated)
41189.8 Da
IEP (calculated)
9.736
GRAVY (calculated)
-0.620
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFRYRAIDI DRPPPVKDTA PSQSLNPNYS FFSALPIPIP GWNIIPGWDY VQREIEKEQI RREIIAAETA RRKELIAEVA QEMAIEREMA IKCMAEKEDK
101: IAMWITQRKL PHQNHNNNFS KLKRTYSDPA IYTRPNSLVT SPMKQMPPLQ QMLEATAAKE TPVLESNKDK LIILDRPDPI GGDAKTRLGR AKRKAKDVEG
201: GLNEPSKRKR LFKFWCDLCS VGACNETVMR NHELGKKHKA AIKKQPEKTA ASTSVIIAPA SLAAPQSEAV TVVANAQLQK VEEVAAKETG KKIEGEKKKS
301: VMVRCEACNI VTYSENVMET HKLGKKHKAM LKKHYSEQAS TVTVKSLDAD PSEEESMVHF LEKASS
101: IAMWITQRKL PHQNHNNNFS KLKRTYSDPA IYTRPNSLVT SPMKQMPPLQ QMLEATAAKE TPVLESNKDK LIILDRPDPI GGDAKTRLGR AKRKAKDVEG
201: GLNEPSKRKR LFKFWCDLCS VGACNETVMR NHELGKKHKA AIKKQPEKTA ASTSVIIAPA SLAAPQSEAV TVVANAQLQK VEEVAAKETG KKIEGEKKKS
301: VMVRCEACNI VTYSENVMET HKLGKKHKAM LKKHYSEQAS TVTVKSLDAD PSEEESMVHF LEKASS
001: MEFRYRAIDN NRPPPATDTT PSPSLKPNFP FLSERSMPGQ QSEDQVREAI KREIEKEQIR QEIIIAEAAR KRELIAEVLQ EMAIEREMAI RRVSDTEMSL
101: EEKLTMWINQ RKLPNQNQNQ FNNFFRQKYS YIDSLINTGS YNSLLTSPMM QLPQLQQMSE ATGTSMLESN KENLIVLNRA DIIGAKPKAD SVGTMQLPKL
201: QQMPEATGTS VLESNKEQFI VLARADPVGE KRKAEDIQTG LNEDLQVKRP KAKESEAKAM SLETGEIVSS KVPCSGKLGS GKKAEGKLRT NQKFWCEICK
301: VGTYCQIVMR DHELGKKHKA AVTQQNETPE AASTSLSPAS VTAPQPEAIR VCENANPQGQ KVDEIAAKET TGKKTKGEKK KKETVWCKTC NIQTNSEQTM
401: RNHTLGKKHM ALLEKQQNKL ITVPVRSLNA DPGQKESVSL AMDDTQGKVH CLEKS
101: EEKLTMWINQ RKLPNQNQNQ FNNFFRQKYS YIDSLINTGS YNSLLTSPMM QLPQLQQMSE ATGTSMLESN KENLIVLNRA DIIGAKPKAD SVGTMQLPKL
201: QQMPEATGTS VLESNKEQFI VLARADPVGE KRKAEDIQTG LNEDLQVKRP KAKESEAKAM SLETGEIVSS KVPCSGKLGS GKKAEGKLRT NQKFWCEICK
301: VGTYCQIVMR DHELGKKHKA AVTQQNETPE AASTSLSPAS VTAPQPEAIR VCENANPQGQ KVDEIAAKET TGKKTKGEKK KKETVWCKTC NIQTNSEQTM
401: RNHTLGKKHM ALLEKQQNKL ITVPVRSLNA DPGQKESVSL AMDDTQGKVH CLEKS
Arabidopsis Description
At2g24030 [Source:UniProtKB/TrEMBL;Acc:Q147F7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.