Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24030.1 | CDY20269 | AT2G24030.1 | 21798944 |
| AT2G24030.1 | CDY39688 | AT2G24030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032130.1-P | Field mustard | nucleus | 99.72 | 96.99 |
| CDY20269 | Canola | nucleus | 95.77 | 92.9 |
| AT2G24030.1 | Thale cress | nucleus | 56.34 | 43.96 |
Protein Annotations
| EnsemblPlants:CDY39688 | EnsemblPlantsGene:GSBRNA2T00068275001 | Gene3D:3.30.160.60 | GO:A0A078HSF8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0008270 | GO:GO:0046872 | InterPro:Matrin/U1-like-C_Znf_C2H2 | InterPro:Znf_C2H2_sf | PANTHER:PTHR23067 |
| PANTHER:PTHR23067:SF43 | PFAM:PF12874 | ProteinID:CDY39688 | ProteinID:CDY39688.1 | SEG:seg | SMART:SM00451 |
| SUPFAM:SSF57667 | UniParc:UPI0004EEB3EC | UniProt:A0A078HSF8 | MapMan:35.2 | : | : |
Description
BnaA04g14050DBnaA04g14050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSF8]
Coordinates
chrLK032454:-:214518..216209
Molecular Weight (calculated)
39918.1 Da
IEP (calculated)
9.763
GRAVY (calculated)
-0.694
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFRYRAIDI DRPPPVKDTA PSQSLNPIPG CNIIPGWDYV QREIEKEQIR REIIAAETAR RKELIAEVAQ EMAIEREMAI KSMAEKEDKI ATWITQRKLP
101: RQNHNNNFSK LKRTYSDPAI YSSPNSLVTS PMKQMPPLQQ MLEATTAKET PVLESNKDKL IILDRPDPIG GDAKTRLGRA KRKAKDVEGG LKEPSKRKRL
201: FKFWCDLCSV GACNETVMRN HELGKKHKAA IKKQPEKTAA STSVIIAPAS LAAPQSEAVT VVPNTQRQKV DEVAAKETGK KIEGEKKKSV MIWCEACNIV
301: TYSENVMETH KLGKKHKAML KKHYSEQAST VTVKSLDADP SEEESMVHFL ENASS
101: RQNHNNNFSK LKRTYSDPAI YSSPNSLVTS PMKQMPPLQQ MLEATTAKET PVLESNKDKL IILDRPDPIG GDAKTRLGRA KRKAKDVEGG LKEPSKRKRL
201: FKFWCDLCSV GACNETVMRN HELGKKHKAA IKKQPEKTAA STSVIIAPAS LAAPQSEAVT VVPNTQRQKV DEVAAKETGK KIEGEKKKSV MIWCEACNIV
301: TYSENVMETH KLGKKHKAML KKHYSEQAST VTVKSLDADP SEEESMVHFL ENASS
001: MEFRYRAIDN NRPPPATDTT PSPSLKPNFP FLSERSMPGQ QSEDQVREAI KREIEKEQIR QEIIIAEAAR KRELIAEVLQ EMAIEREMAI RRVSDTEMSL
101: EEKLTMWINQ RKLPNQNQNQ FNNFFRQKYS YIDSLINTGS YNSLLTSPMM QLPQLQQMSE ATGTSMLESN KENLIVLNRA DIIGAKPKAD SVGTMQLPKL
201: QQMPEATGTS VLESNKEQFI VLARADPVGE KRKAEDIQTG LNEDLQVKRP KAKESEAKAM SLETGEIVSS KVPCSGKLGS GKKAEGKLRT NQKFWCEICK
301: VGTYCQIVMR DHELGKKHKA AVTQQNETPE AASTSLSPAS VTAPQPEAIR VCENANPQGQ KVDEIAAKET TGKKTKGEKK KKETVWCKTC NIQTNSEQTM
401: RNHTLGKKHM ALLEKQQNKL ITVPVRSLNA DPGQKESVSL AMDDTQGKVH CLEKS
101: EEKLTMWINQ RKLPNQNQNQ FNNFFRQKYS YIDSLINTGS YNSLLTSPMM QLPQLQQMSE ATGTSMLESN KENLIVLNRA DIIGAKPKAD SVGTMQLPKL
201: QQMPEATGTS VLESNKEQFI VLARADPVGE KRKAEDIQTG LNEDLQVKRP KAKESEAKAM SLETGEIVSS KVPCSGKLGS GKKAEGKLRT NQKFWCEICK
301: VGTYCQIVMR DHELGKKHKA AVTQQNETPE AASTSLSPAS VTAPQPEAIR VCENANPQGQ KVDEIAAKET TGKKTKGEKK KKETVWCKTC NIQTNSEQTM
401: RNHTLGKKHM ALLEKQQNKL ITVPVRSLNA DPGQKESVSL AMDDTQGKVH CLEKS
Arabidopsis Description
At2g24030 [Source:UniProtKB/TrEMBL;Acc:Q147F7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.