Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20269 | Canola | nucleus | 45.49 | 56.56 |
| CDY39688 | Canola | nucleus | 43.96 | 56.34 |
| Bra032130.1-P | Field mustard | nucleus | 43.96 | 54.79 |
Protein Annotations
| Gene3D:3.30.160.60 | MapMan:35.2 | EntrezGene:816937 | ProteinID:AEC07521.1 | ArrayExpress:AT2G24030 | EnsemblPlantsGene:AT2G24030 |
| RefSeq:AT2G24030 | TAIR:AT2G24030 | RefSeq:AT2G24030-TAIR-G | EnsemblPlants:AT2G24030.1 | TAIR:AT2G24030.1 | Unigene:At.39211 |
| EMBL:BT026136 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0008270 | GO:GO:0046872 | InterPro:Matrin/U1-like-C_Znf_C2H2 | RefSeq:NP_179981.2 | PFAM:PF12874 | PO:PO:0000005 |
| PO:PO:0000293 | PANTHER:PTHR23067 | PANTHER:PTHR23067:SF43 | UniProt:Q147F7 | SMART:SM00451 | SUPFAM:SSF57667 |
| UniParc:UPI000034ED7C | InterPro:Znf_C2H2_sf | SEG:seg | : | : | : |
Description
At2g24030 [Source:UniProtKB/TrEMBL;Acc:Q147F7]
Coordinates
chr2:-:10220061..10222064
Molecular Weight (calculated)
51016.1 Da
IEP (calculated)
9.023
GRAVY (calculated)
-0.766
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFRYRAIDN NRPPPATDTT PSPSLKPNFP FLSERSMPGQ QSEDQVREAI KREIEKEQIR QEIIIAEAAR KRELIAEVLQ EMAIEREMAI RRVSDTEMSL
101: EEKLTMWINQ RKLPNQNQNQ FNNFFRQKYS YIDSLINTGS YNSLLTSPMM QLPQLQQMSE ATGTSMLESN KENLIVLNRA DIIGAKPKAD SVGTMQLPKL
201: QQMPEATGTS VLESNKEQFI VLARADPVGE KRKAEDIQTG LNEDLQVKRP KAKESEAKAM SLETGEIVSS KVPCSGKLGS GKKAEGKLRT NQKFWCEICK
301: VGTYCQIVMR DHELGKKHKA AVTQQNETPE AASTSLSPAS VTAPQPEAIR VCENANPQGQ KVDEIAAKET TGKKTKGEKK KKETVWCKTC NIQTNSEQTM
401: RNHTLGKKHM ALLEKQQNKL ITVPVRSLNA DPGQKESVSL AMDDTQGKVH CLEKS
101: EEKLTMWINQ RKLPNQNQNQ FNNFFRQKYS YIDSLINTGS YNSLLTSPMM QLPQLQQMSE ATGTSMLESN KENLIVLNRA DIIGAKPKAD SVGTMQLPKL
201: QQMPEATGTS VLESNKEQFI VLARADPVGE KRKAEDIQTG LNEDLQVKRP KAKESEAKAM SLETGEIVSS KVPCSGKLGS GKKAEGKLRT NQKFWCEICK
301: VGTYCQIVMR DHELGKKHKA AVTQQNETPE AASTSLSPAS VTAPQPEAIR VCENANPQGQ KVDEIAAKET TGKKTKGEKK KKETVWCKTC NIQTNSEQTM
401: RNHTLGKKHM ALLEKQQNKL ITVPVRSLNA DPGQKESVSL AMDDTQGKVH CLEKS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.