CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 2
peroxisome 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	100.0	100.0
CDY09765	Canola	cytosol, nucleus, peroxisome	97.18	97.18
CDY48286	Canola	cytosol	76.41	76.68
CDY22924	Canola	cytosol	76.06	76.33
AT4G15417.2	Thale cress	mitochondrion	59.86	58.82
VIT_12s0059g01120.t01	Wine grape	cytosol	45.42	44.95
PGSC0003DMT400086351	Potato	cytosol	31.69	44.34
Solyc05g041920.2.1	Tomato	cytosol	40.14	42.86
PGSC0003DMT400053499	Potato	mitochondrion	42.96	41.92
Solyc07g049160.2.1	Tomato	mitochondrion	40.49	39.25
EES13704	Sorghum	cytosol	40.14	39.18
PGSC0003DMT400001808	Potato	cytosol	34.51	39.04
PGSC0003DMT400001805	Potato	mitochondrion	39.79	38.57
Os06t0358800-01	Rice	cytosol	39.79	37.79
TraesCS7B01G248100.1	Wheat	cytosol	40.49	37.22
TraesCS7D01G344100.1	Wheat	cytosol	40.49	37.22
TraesCS7D01G344200.1	Wheat	cytosol	40.49	36.74
Solyc07g049150.2.1	Tomato	cytosol	34.51	36.57
TraesCS7A01G336500.1	Wheat	cytosol	39.79	36.22
Solyc05g024210.1.1	Tomato	cytosol	41.9	35.42
Zm00001d032362_P002	Maize	mitochondrion	40.49	34.95
HORVU7Hr1G082860.4	Barley	plastid	40.49	32.03
CDY54644	Canola	cytosol	33.45	28.36
TraesCS2D01G479300.1	Wheat	plastid	33.1	27.17
CDY29825	Canola	plastid	32.75	24.8
CDY30942	Canola	nucleus	31.69	7.14
CDY43132	Canola	cytosol, nucleus, plastid	32.39	6.63
CDY50692	Canola	nucleus	32.04	6.55
CDY21223	Canola	nucleus	31.69	5.88
CDY15207	Canola	nucleus	36.62	5.75
CDX90002	Canola	nucleus	36.62	5.74
CDY35811	Canola	nucleus	29.58	5.12
CDX92469	Canola	nucleus, plastid	28.87	4.99
GSMUA_Achr10P...	Banana	extracellular	2.46	3.74
GSMUA_Achr9P22470_001	Banana	cytosol	2.11	1.57
CDY50691	Canola	nucleus	2.82	1.43

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	GO:A0A078DNP0	EnsemblPlants:CDX90592	ProteinID:CDX90592
ProteinID:CDX90592.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00151229001
InterPro:IPR000999	InterPro:IPR036389	PFAM:PF00636	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35
InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI00025407D4

Description

BnaA03g41890D

Coordinates

chrLK031863:-:999455..1001097

Molecular Weight (calculated)

32465.1 Da

IEP (calculated)

6.937

GRAVY (calculated)

-0.326

Length

284 amino acids

Sequence
(BLAST)

001: METQLSNADA DSLQRLLNLS LGAKENTAKI VNGSRSANST NPQYQPLDIE FVEKILNYKF KDKSLLLQAF TDATFDENCV SYERLEFLGD TVLNMVITKY
101: LYNRYGDCSP GLLTNLRAVN VDTEKLARVA VKHNLHRCLR HKKPLLEDQI LEFTKAMETY PLHSRGLLKV PKSLADIVES TIGALYTDCD SFETVWKVVM
201: PLLEPIISLD KLENHPMTEL HEMCQKKNLK LRFDDSTWEV DKRVLVFIED KLVGRGHHLA KKDSAKNCAA KDALDNFSYF FTKI

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.