Factsheet for GSMUA_Achr9P22470_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	extracellular	14.14	28.88
GSMUA_Achr8P12350_001	Banana	nucleus	32.72	6.88
GSMUA_Achr5P10880_001	Banana	cytosol	26.96	6.45
HORVU7Hr1G082860.4	Barley	plastid	3.66	3.9
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	1.31	3.47
PGSC0003DMT400053499	Potato	mitochondrion	2.36	3.09
GSMUA_Achr10P...	Banana	cytosol	3.14	2.84
VIT_12s0059g01120.t01	Wine grape	cytosol	2.09	2.79
AT4G15417.2	Thale cress	mitochondrion	1.83	2.42
GSMUA_Achr9P22460_001	Banana	cytosol, golgi, nucleus	8.64	2.42
TraesCS7D01G344100.1	Wheat	cytosol	1.83	2.27
TraesCS7B01G248100.1	Wheat	cytosol	1.83	2.27
TraesCS7D01G344200.1	Wheat	cytosol	1.83	2.24
CDY22924	Canola	cytosol	1.57	2.12
CDY48286	Canola	cytosol	1.57	2.12
Bra039552.1-P	Field mustard	cytosol	1.57	2.12
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	1.57	2.11
CDX90592	Canola	cytosol, nucleus, peroxisome	1.57	2.11
CDY09765	Canola	cytosol, nucleus, peroxisome	1.57	2.11
GSMUA_Achr10P...	Banana	nucleus	3.66	2.11
Solyc05g024210.1.1	Tomato	cytosol	1.83	2.08
PGSC0003DMT400001805	Potato	mitochondrion	1.57	2.05
Solyc07g049160.2.1	Tomato	mitochondrion	1.57	2.05
TraesCS2D01G479300.1	Wheat	plastid	1.83	2.02
PGSC0003DMT400001808	Potato	cytosol	1.31	1.99
TraesCS7A01G336500.1	Wheat	cytosol	1.57	1.92
Solyc05g041920.2.1	Tomato	cytosol	1.31	1.88
Solyc07g049150.2.1	Tomato	cytosol	1.31	1.87
Os06t0358800-01	Rice	cytosol	1.31	1.67
Zm00001d032362_P002	Maize	mitochondrion	1.31	1.52
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	1.57	1.47
EES13704	Sorghum	cytosol	1.05	1.37
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	3.93	1.34
GSMUA_Achr2P15170_001	Banana	cytosol	1.05	1.18
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	1.05	1.17
PGSC0003DMT400086351	Potato	cytosol	0.52	0.99

Protein Annotations

EnsemblPlants:GSMUA_Achr9P22470_001	EnsemblPlants:GSMUA_Achr9T22470_001	EnsemblPlantsGene:GSMUA_Achr9G22470_001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:P-loop_NTPase	PANTHER:PTHR14950	PANTHER:PTHR14950:SF15	PFAM:PF00270	PFscan:PS51192	SMART:SM00487
SUPFAM:SSF52540	UniParc:UPI0002958CF1	UniProt:M0U2K6	MapMan:35.1	:	:

Description

Endoribonuclease Dicer homolog 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22470_001]

Coordinates

chr9:-:27561661..27578186

Molecular Weight (calculated)

43037.3 Da

IEP (calculated)

8.682

GRAVY (calculated)

-0.244

Length

382 amino acids

Sequence
(BLAST)

001: MDGNSTAPNR VKDPRTIARK YQMDLCKRAV EENIIVYLGT GCGKTHIAVL LMYELGHLIR KPSKSICIFL APTVPLVRQQ AMVIESSTDF KVRCHYGSQK
101: NLKDHDDWNK EIDQSEVLVM TPQILLQNLR HCFIRMDLVA LLIFDECHHA QAPTRHPYAQ IMREFYKTKG DGSKCPRVFG MTASPIIGKG SQFWSISVYR
201: ALLGGTDLSN YTKCINSLEN LLDAKVCSVD DESELEGFVA SPDIKVYYYG PLFYTASSLT FVYSKKLEDI KVQCISMLKD KLCDFRECQN QIKLLHRLHD
301: NIIFCLEQIG LFGAIRVSLF QRTIRGEKHE GGRLLGRLGA MTSKEEGRGR GLSGALNRGD GGGIANARGL RMDARSDGKE LW

Best Arabidopsis Sequence Match ( AT5G20320.1 )
(BLAST)

0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC

Arabidopsis Description

DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.