Factsheet for GSMUA_Achr10P28110_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52276	Soybean	cytosol	34.84	45.92
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	15.69	30.5
GSMUA_Achr2P15170_001	Banana	cytosol	14.63	28.53
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	16.74	27.27
CDY30942	Canola	nucleus	47.51	24.98
Solyc08g067210.2.1	Tomato	nucleus	53.85	24.96
Os01t0909200-01	Rice	cytosol	58.22	23.38
KXG33962	Sorghum	nucleus	56.86	22.75
Zm00001d042432_P007	Maize	cytosol	55.96	22.24
GSMUA_Achr5P10880_001	Banana	cytosol	52.49	21.78
Bra019456.1-P	Field mustard	nucleus	47.51	21.77
KRH61605	Soybean	nucleus	54.6	21.62
TraesCS3D01G411200.6	Wheat	nucleus	53.24	21.6
TraesCS3B01G450600.3	Wheat	nucleus	53.54	21.17
TraesCS3A01G415400.2	Wheat	nucleus	53.54	21.16
HORVU3Hr1G092430.9	Barley	cytosol, nucleus, plastid	53.24	20.95
CDY21223	Canola	nucleus	47.51	20.57
VIT_04s0008g02170.t01	Wine grape	mitochondrion	58.52	19.97
AT3G43920.2	Thale cress	cytosol, nucleus, plastid	47.21	19.81
GSMUA_Achr9P22460_001	Banana	cytosol, golgi, nucleus	30.32	14.75
GSMUA_Achr8P12350_001	Banana	nucleus	33.63	12.27
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	11.46	6.8
GSMUA_Achr10P...	Banana	extracellular	1.66	5.88
GSMUA_Achr9P22470_001	Banana	cytosol	2.11	3.66
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	0.75	3.47
GSMUA_Achr10P...	Banana	cytosol	0.6	0.95

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090501	GO:GO:0090502	EnsemblPlantsGene:GSMUA_Achr10G28110_001	EnsemblPlants:GSMUA_Achr10P28110_001	EnsemblPlants:GSMUA_Achr10T28110_001
InterPro:IPR000999	InterPro:IPR036389	UniProt:M0RM35	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50142
PANTHER:PTHR14950	PANTHER:PTHR14950:SF31	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768
SUPFAM:SSF69065	UniParc:UPI000295A3C4	SEG:seg	:	:	:

Description

Endoribonuclease Dicer homolog 3a [Source:GMGC_GENE;Acc:GSMUA_Achr10G28110_001]

Coordinates

chr10:-:31025059..31029004

Molecular Weight (calculated)

74858.5 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.231

Length

663 amino acids

Sequence
(BLAST)

001: MPPELLVDID VPYEVLKSFY LLPSLMYRVE SLMLACQLRK EISFCSSNPI PSFLILEAIT TLRCCEDFSM ERLELLGDSV LKYAVSCSLF LKFPGKHEGK
101: LSSDRIKIIR NATLHSLGTK RGIQVQHHFH LFGFIFSRFY VKFFHQVINT HSKAGYIRDA AFEPRRWVAP GHISIHRKAC DRGHRWLCSK TISDCVEALI
201: GAYYVGGGLP AALAFIKWLG IDTEFEPDMV EEAIRTASGW TYLPKIHEIE TLESKIGYKF TVKGLLLESI THASQQELGV FFCYQRLEFL GDSVLDLLIT
301: WHLFQRHKDI DPGELTDLRS ASVNNENFAQ VAVRHKLQQH LQHNSGLLLE QITEFVKRLE DSDENKYMLL SNGSSKVPKV LGDMVESIAG AILIDTKLDL
401: DKVWEIFEPL LSPIATPENL ELPPLRELTE LCSHHGYFLN TTCTNEGDMN VAVLEVQLED VLLVREGREK NKKAAKGQAA YLLLKDLEEK GFLHSRYASK
501: GTQAEEKIAS HKESVEKSGS LMLDIEIPTP AKHGEVVNSK NVSVPSPGKP VALTVKMQKG GPRTALYELC KRCQWPMPSF ETLEWKPSGD QMNECTEGGD
601: ANRHMFVSGI TLHIPNSTII KRKGDRRPDK KSSQDSAALT MLYELEKLGR CQIEAQQPAE RIS

Best Arabidopsis Sequence Match ( AT3G43920.4 )
(BLAST)

0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGYELKV YEVAKNRNII AVLGTGIDKS EITKRLIKAM GSSDTDKRLI IFLAPTVNLV
0101: KQQCCEIRAL VNLKVEEYFG AKGVDKWTSQ RWDEEFSKHD VLVMTPQILL DVLRSAFLKL EMVCLLIIDE CHHTTGNHPY AKLMKEFYHE STSKPKIFGL
0201: TASAVIRKAQ VSELERLMDS KIFNPEEREG VEKFATTVKE GPILYNPSPS CSLELKEKLE TSHLKFDASL RRLQELGKDS FLNMDNKFET YQKRLSIDYR
0301: EILHCLDNLG LICAHLAAEV CLEKISDTKE ESETYKECSM VCKEFLEDIL STIGVYLPQD DKSLVDLQQN HLSAVISGHV SPKLKELFHL LDSFRGDKQK
0401: QCLILVERII TAKVIERFVK KEASLAYLNV LYLTENNPST NVSAQKMQIE IPDLFQHGKV NLLFITDVVE EGFQVPDCSC MVCFDLPKTM CSYSQSQKHA
0501: KQSNSKSIMF LERGNPKQRD HLHDLMRREV LIQDPEAPNL KSCPPPVKNG HGVKEIGSMV IPDSNITVSE EAASTQTMSD PPSRNEQLPP CKKLRLDNNL
0601: LQSNGKEKVA SSKSKSSSSA AGSKKRKELH GTTCANALSG TWGENIDGAT FQAYKFDFCC NISGEVYSSF SLLLESTLAE DVGKVEMDLY LVRKLVKASV
0701: SPCGQIRLSQ EELVKAKYFQ QFFFNGMFGK LFVGSKSQGT KREFLLQTDT SSLWHPAFMF LLLPVETNDL ASSATIDWSA INSCASIVEF LKKNSLLDLR
0801: DSDGNQCNTS SGQEVLLDDK MEETNLIHFA NASSDKNSLE ELVVIAIHTG RIYSIVEAVS DSSAMSPFEV DASSGYATYA EYFNKKYGIV LAHPNQPLMK
0901: LKQSHHAHNL LVDFNEEMVV KTEPKAGNVR KRKPNIHAHL PPELLARIDV PRAVLKSIYL LPSVMHRLES LMLASQLREE IDCSIDNFSI SSTSILEAVT
1001: TLTCPESFSM ERLELLGDSV LKYVASCHLF LKYPDKDEGQ LSRQRQSIIS NSNLHRLTTS RKLQGYIRNG AFEPRRWTAP GQFSLFPVPC KCGIDTREVP
1101: LDPKFFTENM TIKIGKSCDM GHRWVVSKSV SDCAEALIGA YYVSGGLSAS LHMMKWLGID VDFDPNLVVE AINRVSLRCY IPKEDELIEL ERKIQHEFSA
1201: KFLLKEAITH SSLRESYSYE RLEFLGDSVL DFLITRHLFN TYEQTGPGEM TDLRSACVNN ENFAQVAVKN NLHTHLQRCA TVLETQINDY LMSFQKPDET
1301: GRSIPSIQGP KALGDVVESI AGALLIDTRL DLDQVWRVFE PLLSPLVTPD KLQLPPYREL NELCDSLGYF FRVKCSNDGV KAQATIQLQL DDVLLTGDGS
1401: EQTNKLALGK AASHLLTQLE KRNISRKTSL GDNQSSMDVN LACNHSDRET LTSETTEIQS IVIPFIGPIN MKKGGPRGTL HEFCKKHLWP MPTFDTSEEK
1501: SRTPFEFIDG GEKRTSFSSF TSTITLRIPN REAVMYAGEA RPDKKSSFDS AVVELLYELE RRKIVIIQK

Arabidopsis Description

DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.