Factsheet for GSMUA_Achr10P28120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	28.37	83.33
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	89.13	33.75
Solyc08g067210.2.1	Tomato	nucleus	48.7	14.41
KRH61605	Soybean	nucleus	49.88	12.6
Os01t0909200-01	Rice	cytosol	48.94	12.54
KXG33962	Sorghum	nucleus	47.04	12.01
Zm00001d042432_P007	Maize	cytosol	46.81	11.87
VIT_04s0008g02170.t01	Wine grape	mitochondrion	53.66	11.68
TraesCS3B01G450600.3	Wheat	nucleus	46.1	11.63
TraesCS3A01G415400.2	Wheat	nucleus	46.1	11.62
TraesCS3D01G411200.6	Wheat	nucleus	44.68	11.57
HORVU3Hr1G092430.9	Barley	cytosol, nucleus, plastid	45.86	11.51
GSMUA_Achr5P10880_001	Banana	cytosol	41.13	10.89
CDY30942	Canola	nucleus	27.9	9.36
Bra019456.1-P	Field mustard	nucleus	27.9	8.15
AT3G43920.2	Thale cress	cytosol, nucleus, plastid	30.26	8.1
GSMUA_Achr9P22460_001	Banana	cytosol, golgi, nucleus	25.77	8.0
CDY21223	Canola	nucleus	27.9	7.71
GSMUA_Achr8P12350_001	Banana	nucleus	30.73	7.15
GSMUA_Achr9P22470_001	Banana	cytosol	2.84	3.14
GSMUA_Achr10P...	Banana	extracellular	0.95	2.14
GSMUA_Achr10P...	Banana	nucleus	0.95	0.6
KRH52276	Soybean	cytosol	0.71	0.6
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	0.24	0.25
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	0.0	0.0
GSMUA_Achr2P15170_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.160.380	Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dicer_dimer_sf	InterPro:Dicer_dimerisation_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0016891	GO:GO:0090502
EnsemblPlantsGene:GSMUA_Achr10G28120_001	EnsemblPlants:GSMUA_Achr10P28120_001	EnsemblPlants:GSMUA_Achr10T28120_001	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR005034
InterPro:IPR038248	UniProt:M0RM36	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF03368	PFscan:PS51194
PFscan:PS51327	PANTHER:PTHR14950	PANTHER:PTHR14950:SF31	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002956C2C

Description

Putative Endoribonuclease Dicer homolog 3a [Source:GMGC_GENE;Acc:GSMUA_Achr10G28120_001]

Coordinates

chr10:-:31035202..31040514

Molecular Weight (calculated)

46776.4 Da

IEP (calculated)

6.568

GRAVY (calculated)

0.022

Length

423 amino acids

Sequence
(BLAST)

001: MDELGLVCAI EATKICIDAV SSSNSTDRHD FVMVNVAQCK SFLEEVLQKL AERLPADFEL LLKTENDCAA AVQKGYISSK LYELIQIIRS LGMPSQVVCL
101: IFVERNITAK VLERFIKKVC FLSHFTVSYL AGGSSSVDAL TPKTQKDTLD SFRSGKANLL FTTDVAEEGT DVPDCSCVIR FDLPKTARSY IQSHGRARQA
201: GSHYVIMLER GNLQQRDLLF DIIKNKHSTV DIALNRDQDS LVSIVSINED LGAYYVDSTG ASVTADSSVS LINTYCQNLP RDKFTLDGGY YECTITLPPN
301: AAIQTIVGPA NQNSHVAKKL ACLEACKRLH QSGALNDHLL PCVQEHLDDV KAEKTGESAK GAGMYLTIHM AFQKSYDVIL AISYHAANFT WLFRLCKLSK
401: LLILFNQVCN CVILELRLLP NNP

Best Arabidopsis Sequence Match ( AT3G43920.5 )
(BLAST)

0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE TYQKRLSIDY
0301: REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH LLDSFRGDKQ
0401: KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT MCSYSQSQKH
0501: AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP PCKKLRLDNN
0601: LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL YLVRKLVKAS
0701: VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE FLKKNSLLDL
0801: RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI VLAHPNQPLM
0901: KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS ISSTSILEAV
1001: TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP CKCGIDTREV
1101: PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE LERKIQHEFS
1201: AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND YLMSFQKPDE
1301: TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ LDDVLLTGDG
1401: SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW PMPTFDTSEE
1501: KSRWR

Arabidopsis Description

DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.