Factsheet for GSMUA_Achr9P22460_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0149g00120.t01	Wine grape	cytosol	49.08	54.0
Zm00001d025830_P011	Maize	cytosol, nucleus, plasma membrane	55.32	46.86
TraesCS2D01G362700.1	Wheat	nucleus	55.1	46.22
TraesCS2A01G364700.2	Wheat	cytosol	55.03	46.21
HORVU2Hr1G088270.9	Barley	endoplasmic reticulum	55.17	45.99
Os04t0509300-02	Rice	cytosol	55.54	45.69
OQU81938	Sorghum	mitochondrion	55.61	45.53
TraesCS2B01G383300.2	Wheat	plastid	55.25	43.8
Solyc07g005030.2.1	Tomato	cytosol	48.13	42.71
KRH03544	Soybean	nucleus	48.35	40.28
KRH20103	Soybean	nucleus	48.13	40.07
CDY35811	Canola	nucleus	46.59	38.7
CDX92469	Canola	nucleus, plastid	46.59	38.67
Bra002293.1-P	Field mustard	nucleus, plastid	46.44	38.57
AT5G20320.1	Thale cress	cytosol	46.0	36.84
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	3.37	31.94
GSMUA_Achr10P...	Banana	nucleus	14.75	30.32
GSMUA_Achr2P15170_001	Banana	cytosol	7.12	28.53
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	7.12	28.45
GSMUA_Achr10P...	Banana	cytosol	8.0	25.77
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	7.48	25.06
GSMUA_Achr5P10880_001	Banana	cytosol	27.22	23.22
GSMUA_Achr8P12350_001	Banana	nucleus	27.15	20.35
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	12.33	15.04
GSMUA_Achr9P22470_001	Banana	cytosol	2.42	8.64
GSMUA_Achr10P...	Banana	extracellular	0.95	6.95

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:1.20.1320.30	MapMan:16.10.1.3	MapMan:16.10.1.4.2	Gene3D:2.170.260.10	Gene3D:3.30.160.20
Gene3D:3.30.160.380	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dicer_dimer_sf	InterPro:Dicer_dimerisation_dom	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006353	GO:GO:0006396	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009616
GO:GO:0009791	GO:GO:0009944	GO:GO:0009987	GO:GO:0010050	GO:GO:0010216	GO:GO:0010267
GO:GO:0010492	GO:GO:0010599	GO:GO:0016787	GO:GO:0016891	GO:GO:0040029	GO:GO:0048608
GO:GO:0051214	GO:GO:0051607	GO:GO:0090501	GO:GO:0090502	EnsemblPlantsGene:GSMUA_Achr9G22460_001	EnsemblPlants:GSMUA_Achr9P22460_001
EnsemblPlants:GSMUA_Achr9T22460_001	InterPro:Helicase_C	InterPro:IPR000999	InterPro:IPR001650	InterPro:IPR003100	InterPro:IPR005034
InterPro:IPR014720	InterPro:IPR036389	InterPro:IPR038248	UniProt:M0U2K5	InterPro:P-loop_NTPase	InterPro:PAZ_dom
PFAM:PF00271	PFAM:PF00636	PFAM:PF02170	PFAM:PF03368	PFAM:PF14709	ScanProsite:PS00517
PFscan:PS50137	PFscan:PS50142	PFscan:PS50821	PFscan:PS51194	PFscan:PS51327	PANTHER:PTHR14950
PANTHER:PTHR14950:SF15	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00490	SMART:SM00535
SMART:SM00949	SUPFAM:SSF52540	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI000294B950	InterPro:dsRBD_dom
SEG:seg	:	:	:	:	:

Description

Endoribonuclease Dicer homolog 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22460_001]

Coordinates

chr9:-:27543800..27558358

Molecular Weight (calculated)

154523.0 Da

IEP (calculated)

6.183

GRAVY (calculated)

-0.185

Length

1363 amino acids

Sequence
(BLAST)

0001: MLFGFIWYKT NMNNLMTEHG NNDVDSLTIG ALEEPFFSNK LAVLVGILAS YRLQATAKCI IFVKRIIVAK SLAYILGSLE SLKFWKCEFL VGCHGGKESM
0101: SRGKMNTIVE RFSSGEVNLL VATNVAEEGL DIQTCCLVVR FDLPETVASF IQSRGRARMT ISEYVFLVER GNEREGKLLN DFMAGEDIMN KEITSRTSSE
0201: TFDDLEEVNY KVSSTGASIN TGCSVSLLHR YCDKLPRDKY FTPLPKFYYV DDLNGTICRI ILPPNAPLRQ VDGLPCSSKD EAKRNACLKA CKELHERGAL
0301: TDYLLPDINP RRKIGPATHH SEYNSNSIED ESSREELYEL LVPAVLRRSW SNDDTNINLH FYYIRFIPKP KDRQYRMFGL FIKNPLPQEA ESLKVDLHLT
0401: HGRIVETTLT PQGMTTFDKE EIMLAQNFQE MFLKIILDRS EFYSDLVPLG KCNASQDCSS KSYLLLPVIE QLYEGQKMID WTTVRCCLTS PAFIDVSAKF
0501: EKAPCRTSEK LQLLNGSVNK TDVMNSLVFT PHNNLFFFVD GILYETNANS CYKGTKCESY AEYYRDREHL NNLCGHIDIM FHIKLSYPEQ PFLKAKQLFV
0601: CRNLLHNRVQ ANTEARELVE HFVELPPELC SLKIVGFSKD IGSTLSLLPS LMHRMENLLV AIELKEVLSS SFPEASEVRA DRILEALTTE KCLERLSLER
0701: FEVLGDSFLK YAVARHSFLT YEAFDEGQLT RRRSSIVNNS NLYELAIAKK LQVYIRDELF DPTQFFALGR PCKMVCNIDT ESVIHQEENE NLNIAAEGHN
0801: FRCTKSHHWL HRKTIADVVE ALVGAFLVES GFKGAIAFLR WIGISVDFDV SNIYRVWESS NSNLSLISNR NVNELEEILG YTFRCKGLLL QAFVHASYNK
0901: HSGGCYQKLE FLGDAVLEYL ITSYLYSVFP ELKPGQITDL RSITVNNNSF ANVAVWRSLH KYLMKDARSL DEAINKFESF VLLSDLEKDL IEEPACPKVL
1001: GDIVESCVGA VLLDTGFNLK IVWNLMLSLL GPVLDFSSFQ INPLRELREL CQYFNFAMRL PDPVKVGGDY CVKVEADVKD EHLMFTSTNK NSKTARRMAA
1101: QEVLSMLKAR GYKLKSKPLE DIVQSAKKDK PKLIGYDEEP IVIDNLDSIP LEKLQIQTTE ETPHSLGLEK ANGASLLNCS GNSWSSRKEL TRADASESCN
1201: GNHGQIQQTV SDYVEISGTS PGGNHTETAG TLAHKTAKSR LMEICATNHW RDPLFECCKE EGPSHLKMFT YKVTVEVEHE SSVCLECFSE PRPQKKAAQD
1301: HAAEGALWYL RHIGIQPAAC EILIIFEKLW TLMVWHQNGT HIICFGLIGC NCTELLKLNV LFV

Best Arabidopsis Sequence Match ( AT5G20320.1 )
(BLAST)

0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC

Arabidopsis Description

DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.