Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d022648_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20320.1 | Zm00001d022648_P001 | AT3G62800.1 | 24352449 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU81938 | Sorghum | mitochondrion | 92.17 | 89.07 |
| Os04t0509300-02 | Rice | cytosol | 75.39 | 73.2 |
| TraesCS2A01G364700.2 | Wheat | cytosol | 73.15 | 72.52 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 73.15 | 72.43 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 72.28 | 71.13 |
| TraesCS2B01G383300.2 | Wheat | plastid | 73.4 | 68.7 |
| GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 46.86 | 55.32 |
| VIT_11s0149g00120.t01 | Wine grape | cytosol | 38.6 | 50.12 |
| KRH03544 | Soybean | nucleus | 49.97 | 49.14 |
| KRH20103 | Soybean | nucleus | 49.97 | 49.11 |
| Solyc07g005030.2.1 | Tomato | cytosol | 46.18 | 48.37 |
| CDY35811 | Canola | nucleus | 47.61 | 46.68 |
| CDX92469 | Canola | nucleus, plastid | 47.42 | 46.47 |
| Bra002293.1-P | Field mustard | nucleus, plastid | 47.3 | 46.37 |
| AT5G20320.1 | Thale cress | cytosol | 46.8 | 44.24 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 7.71 | 30.69 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 27.16 | 29.83 |
| Zm00001d009879_P002 | Maize | plastid | 6.77 | 28.99 |
| Zm00001d032655_P006 | Maize | nucleus | 28.09 | 28.79 |
| Zm00001d042432_P007 | Maize | cytosol | 29.77 | 28.72 |
| Zm00001d013797_P006 | Maize | nucleus | 12.55 | 27.48 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 29.89 | 24.91 |
| Zm00001d032362_P002 | Maize | mitochondrion | 5.03 | 24.62 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:16.10.1.3 | MapMan:16.10.1.4.2 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 |
| Gene3D:3.40.50.300 | UniProt:A0A1D6JA16 | ProteinID:AQK44759.1 | ProteinID:AQK44765.1 | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006353 | GO:GO:0006396 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009616 | GO:GO:0009791 | GO:GO:0009944 |
| GO:GO:0009987 | GO:GO:0010050 | GO:GO:0010216 | GO:GO:0010267 | GO:GO:0010492 | GO:GO:0010599 |
| GO:GO:0016787 | GO:GO:0016891 | GO:GO:0040029 | GO:GO:0048608 | GO:GO:0051214 | GO:GO:0051607 |
| GO:GO:0090501 | GO:GO:0090502 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 |
| InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 |
| InterPro:IPR038248 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 |
| PFAM:PF03368 | PFAM:PF04851 | PFAM:PF14709 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF15 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0008428995 | EnsemblPlantsGene:Zm00001d025830 |
| EnsemblPlants:Zm00001d025830_P011 | EnsemblPlants:Zm00001d025830_T011 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
dicer-like4 dicer-like 103
Coordinates
chr10:-:131182018..131236877
Molecular Weight (calculated)
182996.0 Da
IEP (calculated)
6.765
GRAVY (calculated)
-0.241
Length
1609 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSEDEAESSS SGAAASEPKD PRTIARKYQL DLCKRAVDEN IIVYLGTGCG KTHIAVLLMY ELGHLIRKPS REVCVFLAPT IPLVRQQAMV IADSTNFKVQ
0101: RYYGSGKHSR DHQAWEKEMG EYEVLVMTPQ ILLHNLRHCF IRMDLIALLI FDECHHAQAQ KRHPYAQIMK EFYNNADKHP RVFGMTASPI IGKGGSNKLT
0201: YTKCINSLEE LLNAKVCSVD NVELESVIAS PKVEVYFYGP VGHSNLTTAY IKELGGYKFQ LLMCFEQSEC MLRESVCNFN ESLKKLKSLW RLHENLIFCL
0301: QEVGLFGALQ AARTFLSSSS VSLDGKGADI NDYANKAMSL LSRDILEGPD ADSFDLETIE EPFFSKKFAV LINVLSRYRL EENMKCIVFV KRIIVARVVV
0401: QILQNLKCLD FWRCEFLVGC HSGLRNMSRD KMSSIIEKFS SGEVNLLVAT SVGEEGLDIQ TCCLVVRFDL PETVNSFIQS RGRARMSKSK YVFLLERGNH
0501: SQEKLLDDYI TGEIIMDKEI NLRTSNDMFN CLEENIYRVN DTGASISTAC SVSLLHRYCD NLPRDIFFVP SPSFFFVDDV DGIVCKLILP PNAAFRQVNG
0601: QPCPSKDEAK RDACLKACIK LHELGALTDF LLPGQGSRKI KVSTTNNSES NKDDDESFRE ELYEMLIPAV LRPSRCKLDS SFKLHFYYIE FIPIPADRRY
0701: QMFGLFVINR LPEESEKLDV ELHLARARIV KAGIKYLGKI EFNKEEMILA HNFQEMFLKV LLDRSEFTPS YILLGNDGAL DMDSTFYLLL PIKQKFYGDN
0801: MIDWPAVKRC LSSPAFQDPM GLSLHDSYLP NESLKLLGGT YNKADVIGSL VYTPHTDLFF FVDAILDGTN AKSELNGATY AEHFKQRLHI KLSHPEQPLL
0901: KAKQLFCLRN LLHNRQLEST ESEARELMEH FVELPPELCS LKIIGFSKDM GSSLSLLPSL MYRLENLLVA IELKDVMSSY FPEASQISAS GILESLTTER
1001: CLERISLERL EVLGDAFLKY VVGRHNFISY EGLDEGQLTR RRSDIVSNSN LYELSIRRNL QVYIRDQHFE PTQFFALGRP CKVVCNPDRE ATLHPKNIDP
1101: DRRENCNLRC TKSHHWLHRK TIADVVESLL GVFIVECGFK AAFAFLHWIG IKVDFENSAF YRVLDASSTN LSLMNYMNIS ELEELIGYTF KRKGLLLQAF
1201: VHPSFNKHSG GCYQRMEFLG DAVLEYLMTS YLYSAYPDLK PGQLTDLKSL AVNNNSFAYV AVKKSIHRYL IKDSNYLTTA VNKFANYVNL SSSEKDLLEE
1301: PTCPKVLGDI VESCVGAVLL DSGFNLNHVW KLMLMLLKPI LSFCGMHIDP MRELRETCQY NGFDLGLPEP TKYNGEFHVK VEVNINGKMI SCTAANRNSK
1401: DARKVAAQET LSKLKNYGYK HKRKSLEEIL RSTTKKESEL IGYDEEPINV EDDIDMQMNN LLINGERTSI QSTAGDNKVD KNDANSGRNN KSNVVMQNGC
1501: LPRGATDKIN QKEYHGDMVR KTARSFLYEL CAANYWKPPE FELCNDEGPS HLRKFTCKVL IEITGTSVSL LECYSDPKLQ KRAAQEHAAE GALWYLKHLG
1601: YLPRDENRF
0101: RYYGSGKHSR DHQAWEKEMG EYEVLVMTPQ ILLHNLRHCF IRMDLIALLI FDECHHAQAQ KRHPYAQIMK EFYNNADKHP RVFGMTASPI IGKGGSNKLT
0201: YTKCINSLEE LLNAKVCSVD NVELESVIAS PKVEVYFYGP VGHSNLTTAY IKELGGYKFQ LLMCFEQSEC MLRESVCNFN ESLKKLKSLW RLHENLIFCL
0301: QEVGLFGALQ AARTFLSSSS VSLDGKGADI NDYANKAMSL LSRDILEGPD ADSFDLETIE EPFFSKKFAV LINVLSRYRL EENMKCIVFV KRIIVARVVV
0401: QILQNLKCLD FWRCEFLVGC HSGLRNMSRD KMSSIIEKFS SGEVNLLVAT SVGEEGLDIQ TCCLVVRFDL PETVNSFIQS RGRARMSKSK YVFLLERGNH
0501: SQEKLLDDYI TGEIIMDKEI NLRTSNDMFN CLEENIYRVN DTGASISTAC SVSLLHRYCD NLPRDIFFVP SPSFFFVDDV DGIVCKLILP PNAAFRQVNG
0601: QPCPSKDEAK RDACLKACIK LHELGALTDF LLPGQGSRKI KVSTTNNSES NKDDDESFRE ELYEMLIPAV LRPSRCKLDS SFKLHFYYIE FIPIPADRRY
0701: QMFGLFVINR LPEESEKLDV ELHLARARIV KAGIKYLGKI EFNKEEMILA HNFQEMFLKV LLDRSEFTPS YILLGNDGAL DMDSTFYLLL PIKQKFYGDN
0801: MIDWPAVKRC LSSPAFQDPM GLSLHDSYLP NESLKLLGGT YNKADVIGSL VYTPHTDLFF FVDAILDGTN AKSELNGATY AEHFKQRLHI KLSHPEQPLL
0901: KAKQLFCLRN LLHNRQLEST ESEARELMEH FVELPPELCS LKIIGFSKDM GSSLSLLPSL MYRLENLLVA IELKDVMSSY FPEASQISAS GILESLTTER
1001: CLERISLERL EVLGDAFLKY VVGRHNFISY EGLDEGQLTR RRSDIVSNSN LYELSIRRNL QVYIRDQHFE PTQFFALGRP CKVVCNPDRE ATLHPKNIDP
1101: DRRENCNLRC TKSHHWLHRK TIADVVESLL GVFIVECGFK AAFAFLHWIG IKVDFENSAF YRVLDASSTN LSLMNYMNIS ELEELIGYTF KRKGLLLQAF
1201: VHPSFNKHSG GCYQRMEFLG DAVLEYLMTS YLYSAYPDLK PGQLTDLKSL AVNNNSFAYV AVKKSIHRYL IKDSNYLTTA VNKFANYVNL SSSEKDLLEE
1301: PTCPKVLGDI VESCVGAVLL DSGFNLNHVW KLMLMLLKPI LSFCGMHIDP MRELRETCQY NGFDLGLPEP TKYNGEFHVK VEVNINGKMI SCTAANRNSK
1401: DARKVAAQET LSKLKNYGYK HKRKSLEEIL RSTTKKESEL IGYDEEPINV EDDIDMQMNN LLINGERTSI QSTAGDNKVD KNDANSGRNN KSNVVMQNGC
1501: LPRGATDKIN QKEYHGDMVR KTARSFLYEL CAANYWKPPE FELCNDEGPS HLRKFTCKVL IEITGTSVSL LECYSDPKLQ KRAAQEHAAE GALWYLKHLG
1601: YLPRDENRF
0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
Arabidopsis Description
DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.